View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 108_14_50 (Length: 249)
Name: 108_14_50
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] 108_14_50 |
| |
|
[»] scaffold0690 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 9242584 - 9242750
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
9242584 |
aggaaatcatctttgttgtttggggaagaaatgaatttctgcaacgaaccatttgggaaaaagtcatagactaaagcacggcgaaatccatccgcgcagt |
9242683 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaattc |
167 |
Q |
|
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
T |
9242684 |
agccaagcaaacgaacgacatttagatgatgaatcttgcccatggttcccacttcatttatgaattc |
9242750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 9364460 - 9364294
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
||||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||| |
|
|
T |
9364460 |
aggaaatcatctttgctgttcgcgggagaaatgaatttctgcaacgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcaga |
9364361 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaattc |
167 |
Q |
|
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9364360 |
agccaagcaaacgaacgacattgagatggtgaattttgcccatggttcccacttcatttatgaattc |
9364294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 9337601 - 9337435
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
||||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||| |
|
|
T |
9337601 |
aggaaatcatctttgctgttcgcgggagaaatgaatttctgcaacgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcaga |
9337502 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaattc |
167 |
Q |
|
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9337501 |
agccgagcaaacgaacgacattgagatggtgaattttgcccatggttcccacttcatttatgaattc |
9337435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 9300149 - 9299994
Alignment:
Q |
9 |
atctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagtagccaagc |
108 |
Q |
|
|
|||||||||| | || ||||||||||||||||||||||||||| ||||||| || |||||||||| |||||| |||||||||| || || |||||||| |
|
|
T |
9300149 |
atctttgttgctaggaggagaaatgaatttctgcaacgaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagc |
9300050 |
T |
|
Q |
109 |
aaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
||||| || ||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
T |
9300049 |
aaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaa |
9299994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 9242501 - 9242588
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9242501 |
gaattctttgatcacaaccttggtggagatactcaatgccattggctatacctagagcaattttttgcaacttatcccatccaaggaa |
9242588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 9337684 - 9337597
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
9337684 |
gaattctttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatcccatccaaggaa |
9337597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 9364543 - 9364456
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
9364543 |
gaattctttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatcccatccaaggaa |
9364456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 9257577 - 9257716
Alignment:
Q |
25 |
ggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagtagccaagcaaacgaacgacattta |
124 |
Q |
|
|
||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||| || || |||||||||| || || |||| | |
|
|
T |
9257577 |
ggagaaatgaatttctgcaacgaaccatttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaagcggacagcattga |
9257676 |
T |
|
Q |
125 |
gatggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
||||||| ||||| ||||| |||||||||||||||||||| |
|
|
T |
9257677 |
gatggtggattttacccatagttcccacttcatttatgaa |
9257716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 9466785 - 9466941
Alignment:
Q |
8 |
catctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagtagccaag |
107 |
Q |
|
|
|||||||||||||||| ||||||| ||||||||||| |||||| |||| |||| || ||||||||| | ||| ||||||||| |||||| ||||||| |
|
|
T |
9466785 |
catctttgttgtttggtggagaaagaaatttctgcaaagaaccacttggaaaaagatcgtagactaaaccgcggtaaaatccatcagcgcagaagccaag |
9466884 |
T |
|
Q |
108 |
caaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
|||||| || ||||| ||||| || ||||| ||||| |||||||||||||||||||| |
|
|
T |
9466885 |
caaacggacaacattaagatgatggatttttcccatagttcccacttcatttatgaa |
9466941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 9300240 - 9300153
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
T |
9300240 |
gaattctttgatcacaaccttggtgaagatactctattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaa |
9300153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 9257470 - 9257557
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
|||||||||||||||||| |||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
T |
9257470 |
gaattctttgatcacaactttggtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttgtcccatccaaggaa |
9257557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8939440 - 8939277
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
|||||| |||| ||||||| || | ||||||||| || ||||| ||||||||||||||||| ||||| || |||||||| ||||||||| || || |
|
|
T |
8939440 |
aggaaaacatccttgttgtcaggtgaagaaatgaaattttgcaatgaaccatttgggaaaaagtcataaaccaaagcacgataaaatccatcggcacaaa |
8939341 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
|||||||||| || || ||||| | ||| |||||||| ||||| |||||||||||||||||||| |
|
|
T |
8939340 |
agccaagcaaccggacaacattaacatgatgaatttttcccatagttcccacttcatttatgaa |
8939277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 9466695 - 9466779
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaag |
246 |
Q |
|
|
||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||| | | ||||||||||| |
|
|
T |
9466695 |
gaattctttgatcacaaccttggtgaagatactcaattccattggctatgcctagagcaatttgttgcagcgtgtcccatccaag |
9466779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8927014 - 8926851
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
|||||| |||| ||||||| || | ||||||||| || |||||||||||||| |||||||| ||||| || | |||||| ||||||||| || || |
|
|
T |
8927014 |
aggaaaacatccttgttgtcgggtgaagaaatgaagttttgcaacgaaccattcgggaaaaagtcataaaccagagcacgataaaatccatcggcacaaa |
8926915 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
|||||||||| ||||| ||||| | ||| || ||||| ||||| |||||||| ||||||||||| |
|
|
T |
8926914 |
agccaagcaaccgaacaacattaacatgatggatttttcccatagttcccacctcatttatgaa |
8926851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8962367 - 8962204
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
|||||| |||| ||||||| || | ||||||||| || |||||||||||||| |||||||| ||||| || |||||||| ||||||||| ||||| |
|
|
T |
8962367 |
aggaaaacatccttgttgtcaggtgaagaaatgaaattttgcaacgaaccattagggaaaaagtcataaaccaaagcacgataaaatccatcagcgcaaa |
8962268 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
||||||| || || || ||||| | ||| || ||||| ||||| ||||| |||||||||||||| |
|
|
T |
8962267 |
agccaagtaaccggacaacattaacatgatggatttttcccatagttcctacttcatttatgaa |
8962204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 8927097 - 8927028
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaa |
231 |
Q |
|
|
||||||| ||||||||||||||||| |||||||| || ||||| || || ||||||||||||| |||||| |
|
|
T |
8927097 |
gaattctatgatcacaaccttggtgaagatactcaatcccattggcaatgcctagagcaatttgttgcaa |
8927028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 8861889 - 8862014
Alignment:
Q |
45 |
cgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagtagccaagcaaacgaacgacatttagatggtgaattttgcccatg |
144 |
Q |
|
|
|||||||||||| || || | ||||| | ||| ||| ||| |||||| |||||| |||||||||||||||| || || | ||||| ||||||||||| |
|
|
T |
8861889 |
cgaaccatttggaaataaattgtagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccata |
8861988 |
T |
|
Q |
145 |
gttcccacttcatttatgaattcttt |
170 |
Q |
|
|
||||||||||||| ||||| ||||| |
|
|
T |
8861989 |
attcccacttcattgatgaactcttt |
8862014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 9070055 - 9070124
Alignment:
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaattcttt |
170 |
Q |
|
|
|||||||||||||||| ||||| | |||||||||||||||||| || |||||||| | ||||| ||||| |
|
|
T |
9070055 |
agccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaactcttt |
9070124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 8962450 - 8962381
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaa |
231 |
Q |
|
|
|||||||||||||||| || ||||| |||||||| || ||||| || || ||||||||||| | |||||| |
|
|
T |
8962450 |
gaattctttgatcacagccctggtgaagatactcaattccattggcaatgcctagagcaatctgttgcaa |
8962381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 10992894 - 10992814
Alignment:
Q |
169 |
ttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
||||||||||||||| || |||||||| | || || |||||||||| |||||||| |||||||| | ||| |||||||| |
|
|
T |
10992894 |
ttgatcacaaccttgatgaagatactcaactcctttagctatacctaaagcaatttcatgcaactttttccaaccaaggaa |
10992814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 9495314 - 9495286
Alignment:
Q |
28 |
gaaatgaatttctgcaacgaaccatttgg |
56 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
9495314 |
gaaatgaatttctgcaacgaaccatttgg |
9495286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1669 - 1503
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
|||||||||||||||||||| || |||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| |
|
|
T |
1669 |
aggaaatcatctttgttgttcaggtgagatatgaatttctgtaacgaaccatttggaaaaaagtcataaactaaagcacgacgaaaaccatctgcgcaaa |
1570 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaattc |
167 |
Q |
|
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
1569 |
agccaagcaaacgaacgacattgagatggtggattttgcccatggttcccacttcatttatgaattc |
1503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 1751 - 1665
Alignment:
Q |
163 |
aattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||||||| |
|
|
T |
1751 |
aattctttgatcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaatttatcccatccaaggaa |
1665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15910437 - 15910603
Alignment:
Q |
1 |
aggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagt |
100 |
Q |
|
|
|||||||||||||||||||| ||| |||| |||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||| ||||| | ||| |
|
|
T |
15910437 |
aggaaatcatctttgttgttcgggtgagatatgaatttttgtaacgaaccatttggaaaaaagtcataaactaaagcacgatgaaaaccatctgagcaaa |
15910536 |
T |
|
Q |
101 |
agccaagcaaacgaacgacatttagatggtgaattttgcccatggttcccacttcatttatgaattc |
167 |
Q |
|
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
15910537 |
agccgagcaaacgaacgacattgagatggtggattttgcccatggttcccacttcatttatgaattc |
15910603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 15910355 - 15910441
Alignment:
Q |
163 |
aattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||||||| |
|
|
T |
15910355 |
aattctttgatcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaatttatcccatccaaggaa |
15910441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 9171533 - 9171397
Alignment:
Q |
28 |
gaaatgaatttctgcaacgaaccatttgggaaaaattcatagactaaagcacggcgaaatccatccgcgcagtagccaagcaaacgaacgacatttagat |
127 |
Q |
|
|
||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||| ||||| ||||||||||||| || |||||||||| |
|
|
T |
9171533 |
gaaatgaatttctgcaaagaaccatttgggaaaaaatcatagactagagcacgatgaaatccatcggcgcaaaagccaagcaaacggacaacatttagat |
9171434 |
T |
|
Q |
128 |
ggtgaattttgcccatggttcccacttcatttatgaa |
164 |
Q |
|
|
|||| ||||||||||| |||||||||||||||||||| |
|
|
T |
9171433 |
ggtggattttgcccatagttcccacttcatttatgaa |
9171397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 9171649 - 9171562
Alignment:
Q |
162 |
gaattctttgatcacaaccttggtggagatactcnatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
249 |
Q |
|
|
||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||| ||||||| |||||| |
|
|
T |
9171649 |
gaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgtcccatctaaggaa |
9171562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8451 times since January 2019
Visitors: 7802