View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_14_71 (Length: 444)
Name: 108_14_71
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_14_71 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 202 - 444
Target Start/End: Original strand, 8310149 - 8310391
Alignment:
| Q |
202 |
gcagtttgcaagctgcaaggaaacgtttactgttcttatgatttacatcactgaagttgattaatgatctgaaaacgtgattcctcacaaatacatgatc |
301 |
Q |
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| T |
8310149 |
gcagtttgcaagctgcaaggaaacgtttactgttcttatgatttaaatcactgaagttgattaatgatctgaaaacgtgattcctcacaaatacatgatc |
8310248 |
T |
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| Q |
302 |
aacaactagtgatttccacatcttagaaatgcacatcaattcaactggattatctgaatcaattcttgatatgatatggatcaatagttcatgcgggagt |
401 |
Q |
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| T |
8310249 |
aacaactagtgatttccacatcttagaaatgcacatcaattcaactggattatctgaatcaattcttgatatgatatggatcaatagttcatgcgggagt |
8310348 |
T |
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| Q |
402 |
tcttgaaatgataccgccgttgttgcttcctccatcgtgcaat |
444 |
Q |
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| T |
8310349 |
tcttgaaatgataccgccgttgttgcttcctccatcgtgcaat |
8310391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8309963 - 8310077
Alignment:
| Q |
1 |
ccaatgccgtataaatcttaatgatcatagcagcattgtttatcgcccattgatccacttcttcttcatcaagattatcccgctcagccaaccatttcac |
100 |
Q |
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| T |
8309963 |
ccaatgccgtataaatcttaatgatcatagcagcattgtttatcgcccattgatccacttcttcttcatcaagattatcccgctcagccaaccatttcac |
8310062 |
T |
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| Q |
101 |
cataaattgtttctc |
115 |
Q |
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| T |
8310063 |
cataaattgtttctc |
8310077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 30411785 - 30411914
Alignment:
| Q |
218 |
aaggaaacgtttactgt--tcttatgatttacatcactgaagttgattaatgatctgaaaacgtgattcctcacaaatacatgatcaacaactagtgatt |
315 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30411785 |
aaggaagcgtttactgtgttcttatgatttacatcactgaagtcagttaacattctggaaaggtgattcctcacaaatacatgatcaacaactagtgatt |
30411884 |
T |
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| Q |
316 |
tccacatcttagaaatgcacatcaattcaa |
345 |
Q |
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| T |
30411885 |
tccacaacttacaaatgcacctcaaatcaa |
30411914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 27662957 - 27663044
Alignment:
| Q |
28 |
tagcagcattgtttatcgcccattgatccacttcttcttcatcaagattatcccgctcagccaaccatttcaccataaattgtttctc |
115 |
Q |
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|||| |||||||||||||||||| | | | |||||||||||||| ||||| |||||||| |||| | |||| ||||||||||||||| |
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| T |
27662957 |
tagctgcattgtttatcgcccatcgtttcctttcttcttcatcaaaattattccgctcaggcaacaagttcatcataaattgtttctc |
27663044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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