View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_15_88 (Length: 305)
Name: 108_15_88
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_15_88 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3882151 - 3881972
Alignment:
| Q |
1 |
gtcaggagatggacaaaacctataggttcctgaacttgaggctacaaaagctcccaaagaagccctgaaaagttcttccaacttatcatttgacaggaga |
100 |
Q |
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| T |
3882151 |
gtcaggagatggacaaaacctataggttcctgaacttgaggctacaaaagctcccaaagaagccctgaaaagttcttccaacttatcatttgacaggaga |
3882052 |
T |
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| Q |
101 |
gttctgaaatctacaagcaaaatatgatttccacagccttgatgagcacaacgtattgggaaactgccttggttttttat |
180 |
Q |
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| T |
3882051 |
gttctgaaatctacaagcaaaatatgatttccacagccctgatgagcacaacgtattgggaaactgccttggttttttat |
3881972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 39317241 - 39317414
Alignment:
| Q |
1 |
gtcaggagatggacaaaacctataggttcctgaacttgaggctacaaaagctcccaaagaagccctgaaaagttcttccaacttatcatttgacaggaga |
100 |
Q |
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||||||||| || ||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39317241 |
gtcaggagacgggcaaaacctataagttcccgaactcgaagctacaaaagctcccaaagaagccctgaaaagttcgtccaacttatcatttgacaggaga |
39317340 |
T |
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| Q |
101 |
gttctgaaatctacaagcaaaatatgatttccacagccttgatgagcacaacgtattgggaaactgccttggtt |
174 |
Q |
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| T |
39317341 |
gttctaaaatctgtaagcaaaataggatctccacagccttggtgagcacagcatattgggaaactgccttggtt |
39317414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 3882243 - 3882147
Alignment:
| Q |
182 |
tggcacctggtacaagtctctgaataacataccccacaaacaaatggcgcactagctgngtcgggatctgcaactctatagattgaggggnagtcag |
278 |
Q |
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| T |
3882243 |
tggcacctggtacaagtctctgaataacatgccccacaaacaaatggcgcactagctgtgtcgggatctgcaactctatagattgaggggcagtcag |
3882147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 39317148 - 39317245
Alignment:
| Q |
181 |
gtggcacctggtacaagtctctgaataacataccccacaaacaaatggcgcactagctgngtcgggatctgcaactctatagattgaggggnagtcag |
278 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||| ||| | ||| ||| |||||| |
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| T |
39317148 |
gtggcacttggtacatgtctctgaataacatgccccacaaacaaatggctcactagctgtgtcggaatctgcaactcgataaactgaagggcagtcag |
39317245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 14011776 - 14011955
Alignment:
| Q |
1 |
gtcaggagatggacaaaacctataggttcctgaacttgaggctacaaaagctcccaaagaagccctgaaaagttcttccaacttatcatttgacaggaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011776 |
gtcaggagatggacaaaacctataggttcctgaacttgaggctacaaaagctcccaaagaagccctgaaaagttcttccaacttatcatttgacaggaga |
14011875 |
T |
|
| Q |
101 |
gttctgaaatctacaagcaaaatatgatttccacagccttgatgagcacaacgtattgggaaactgccttggttttttat |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011876 |
gttctgaaatctacaagcaaaatatgatttccacagccctgatgagcacaacgtattgggaaactgccttggttttttat |
14011955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 14011684 - 14011780
Alignment:
| Q |
182 |
tggcacctggtacaagtctctgaataacataccccacaaacaaatggcgcactagctgngtcgggatctgcaactctatagattgaggggnagtcag |
278 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
14011684 |
tggcacctggtacaagtctctgaataacatgccccacaaacaaatggaacactagctgtgtcgggatctgcaactctatagattgaggggcagtcag |
14011780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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