View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_16_18 (Length: 267)
Name: 108_16_18
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_16_18 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 40961952 - 40962145
Alignment:
| Q |
47 |
attaattacacaagcctctttattccagcaccaattgaaaaatcaatacccactgtacctgacccatcactcttgttatttattataattacatgttaca |
146 |
Q |
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| T |
40961952 |
attaattacacaagtctctttcttccagcaccaattgaaaaaccaatacccactgtacctgacccatcactcttgttatttattataattacatgttaca |
40962051 |
T |
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| Q |
147 |
ttggaaataaaattagtataattacaatctaggttagtttgaatattgattaggaaaataatacaaggtagtggtactaccctgagttataatt |
240 |
Q |
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| T |
40962052 |
ttggaaataaaattagtataattacaatctaggttagtttgaatattgattaggaaaataatacaaggtagtggtactaccctgagttttaatt |
40962145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 40962216 - 40962256
Alignment:
| Q |
13 |
tacttgaaacaacgggagtatggtg-ttttttgaaattaat |
52 |
Q |
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| T |
40962216 |
tacttgaaacaacgggagtatggtgtttttttgaaattaat |
40962256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 40983320 - 40983381
Alignment:
| Q |
47 |
attaattacacaagcctctttattccagcaccaattgaaaaatcaatacccactgtacctga |
108 |
Q |
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| T |
40983320 |
attaatcacacaagcctctttcttccagtgccaattataaaatcaatatccactgtccctga |
40983381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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