View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_17_16 (Length: 622)
Name: 108_17_16
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_17_16 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 3225188 - 3224826
Alignment:
| Q |
1 |
ataacaatttaaaaccttgataacaagacaaatatgttaatgtatattacctttgtcacacttttcagggtgcatattccatgttgttaatgcaataaca |
100 |
Q |
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| T |
3225188 |
ataacaatttaaaatcttgataacaagactaatatgttaatgtatattacctttgtcacacttttcagggtgcatattccatgttgttaatgcaataaca |
3225089 |
T |
|
| Q |
101 |
caagccagtgtgctaaggatccgatcatgtgttaaaaacagttgactaccaccccatgaaccatcttgaagttgatttttcacaatccactctaaacttg |
200 |
Q |
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| T |
3225088 |
caagccagtgtgctaaggatccgatcatgtgttaaaaacagttgactatcaccccatgaaccatcttgaagttgatttttcacaatccactctagactag |
3224989 |
T |
|
| Q |
201 |
atggaaattgtggtgtaccactagaatgtacatcttccacaagtgcaacccaagcagtatcataagcagacatatttgtctttccatcttccaatgaact |
300 |
Q |
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| T |
3224988 |
atggaaattgtggtgtaccactagtatgcacatcttccacaagtgcaacccaagcagtatcataagcagacatatttgtctttccatcttccaatgaact |
3224889 |
T |
|
| Q |
301 |
caatattgatttgattgagttcactaaaccgaccttcttattaaccataaaatgtatattaat |
363 |
Q |
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| T |
3224888 |
caatattgatttgattgagttcactaaaccgaccttcttattaaccataaaatgtatattaat |
3224826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 402 - 590
Target Start/End: Complemental strand, 3225438 - 3225249
Alignment:
| Q |
402 |
agtaccttctaagtttttcatctctctttgcaaaaatgtttttcaatattggagaatcatttggcacatcaatgttcaatctacgagctctatcaagaag |
501 |
Q |
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| T |
3225438 |
agtaccttctaagtttttcatctctctttgcaaaaatgttttttaatattggagaatcatttggcacatcaatgttcaatctacgagctctatcaagaag |
3225339 |
T |
|
| Q |
502 |
tgnagggaaaataacntcaaaaccaactagctcc-cattctcatcctcaagcttgtcaagattctctctgaaaaatgacattgctatata |
590 |
Q |
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| T |
3225338 |
tgaagggaatataacttcaaaaccagctagctcctcattctcatcctcaagcttgtcaagattctctctgaaaaatgacattgctatata |
3225249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 43 - 336
Target Start/End: Original strand, 3184571 - 3184864
Alignment:
| Q |
43 |
tatattacctttgtcacacttttcagggtgcatattccatgttgttaatgcaataacacaagccagtgtgctaaggatccgatcatgtgttaaaaacagt |
142 |
Q |
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|||||||||||| || |||||||| |||||||||||||| | | |||| |||||||||||||||| |||| ||| ||| |||||||| | |||||| | |
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| T |
3184571 |
tatattacctttctcgcacttttcggggtgcatattccacgatcttaaagcaataacacaagccaatgtgttaatgattcgatcatgagcagaaaacaat |
3184670 |
T |
|
| Q |
143 |
tgactaccaccccatgaaccatcttgaagttgatttttcacaatccactctaaacttgatggaaattgtggtgtaccactagaatgtacatcttccacaa |
242 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||| || ||||||||| ||| |||||||| |||| |
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| T |
3184671 |
tgactatcaccccatgaaccatcttgaagttgatttttagaaatccattctagacttgagggaaattgaggagtaccactattatgaacatcttcaacaa |
3184770 |
T |
|
| Q |
243 |
gtgcaacccaagcagtatcataagcagacatatttgtctttccatcttccaatgaactcaatattgatttgattgagttcactaaaccgacctt |
336 |
Q |
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| |||||||||||||||||||||||||| ||| || ||| ||||||||||| |||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
3184771 |
gagcaacccaagcagtatcataagcagatatagttatctctccatcttccattgaattcaatattgatttgattttgttcactaaaccaacctt |
3184864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 3184133 - 3184236
Alignment:
| Q |
404 |
taccttctaagtttttcatctctctttgcaaaaatgtttttcaatattggagaatcatttggcacatcaatgttcaatctacgagctctatcaagaagtg |
503 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
3184133 |
taccttttgagtttttcatctctctttgcaaaaatgtttttcaatattggagaatcatttggcacatcaatgttcaatcttcgagctctatcgagaagtg |
3184232 |
T |
|
| Q |
504 |
nagg |
507 |
Q |
| |
|
||| |
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|
| T |
3184233 |
aagg |
3184236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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