View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_18_24 (Length: 255)
Name: 108_18_24
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_18_24 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 59 - 255
Target Start/End: Complemental strand, 32401299 - 32401103
Alignment:
| Q |
59 |
attaataataattttcccttctcctnnnnnnnnttataacctcatcacggtaagcttcaacaggatgcttcccaagatcttggtaaagagctttagatat |
158 |
Q |
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| T |
32401299 |
attaataataattttcccttctcctaaaaaaaattataacctcatcacggtaagcttcaacaggatgcttcccaagatcttggtaaagagctttagatat |
32401200 |
T |
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| Q |
159 |
agcatcttcattttcatgaattaggttaagtagagctttgagctgattttttctccatgtaacacttcttgtttttcctgttttgaagtattgtctc |
255 |
Q |
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| T |
32401199 |
agcatcttcattttcatgaattaggttaagtagagctttgagctggttttttctccatgtaacacttcttgtttttcctgttttgaagtattgtctc |
32401103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32401107 - 32401044
Alignment:
| Q |
1 |
gtctcaaatctcttacagtttcttctacttccacaccaatgttgttgttcattgtaggattaat |
64 |
Q |
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| T |
32401107 |
gtctcaaatctcttacagtttcttctacttccacaccaatgttgttgttcattgtaggattaat |
32401044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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