View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_18_25 (Length: 244)
Name: 108_18_25
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] 108_18_25 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 35986290 - 35986403
Alignment:
Q |
1 |
cacttcactagaagaaaatagaagtgtctagtatctattttatgtttctttttcgtagtaaaaattattannnnnnnaaataatttagtttgtt-agata |
99 |
Q |
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T |
35986290 |
cacttcactagaagaaaatagaagtgtctagtatatattttatgtttctttttcgtagtaaaaattatta-ttttttaaataatttagtttgttcagata |
35986388 |
T |
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Q |
100 |
caactatatataaaa |
114 |
Q |
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|||||||||| |||| |
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T |
35986389 |
caactatataaaaaa |
35986403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 35986135 - 35986181
Alignment:
Q |
131 |
aaattaattcttcatattttgcgggattcaaataaacggaatcaaat |
177 |
Q |
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T |
35986135 |
aaattaattcttcatattttgtgggattcaaataaacggaatcaaat |
35986181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 35986253 - 35986294
Alignment:
Q |
195 |
aagaaaaaaccacttttttagcaatctaaattcgacacactt |
236 |
Q |
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T |
35986253 |
aagaaaaaaccacttttttagcaatccaaattcgacacactt |
35986294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 10297291 - 10297251
Alignment:
Q |
78 |
aaataatttagtttgttag-atacaactatatataaaaggg |
117 |
Q |
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||||||||||||||||| | ||||||||||||||||||||| |
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T |
10297291 |
aaataatttagtttgtttggatacaactatatataaaaggg |
10297251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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