View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_18_35 (Length: 353)
Name: 108_18_35
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_18_35 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 93 - 329
Target Start/End: Original strand, 4782410 - 4782645
Alignment:
| Q |
93 |
attaatctatttatgataatctatgtattttttagtcgatgatgagaaatgtacttaatacaataatttatctttttaccaatttaaaattaagacaaca |
192 |
Q |
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| T |
4782410 |
attaatctatttatgataatctatgtattttttagtcgatgataagaaatgtacttaatacaataatttatctttttaccaatttaaaattaagacaaca |
4782509 |
T |
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| Q |
193 |
tcacttacttggttcttatttttcatccatttgcagggaatatntgatggacccnattgtccgataaattctaaagatacnaatcattgtgtgttaatag |
292 |
Q |
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| T |
4782510 |
tcacttacttggttctta-ttttcatccatttgcagggaatatatgatggacccaattgtccggtgaattctaaagatacaaatcattgtgttttaatag |
4782608 |
T |
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| Q |
293 |
ngggttatgattcaatagacggccaagattcttggat |
329 |
Q |
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| T |
4782609 |
tgggttatgattcagtggatggtcaagattattggat |
4782645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4783196 - 4783293
Alignment:
| Q |
1 |
accaagtctatcaaaaaggtccatattttaaaactgagaagaaagctaggtgttgtagcttttgaaagtttaaattaagaaagcatgttgagattaat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783196 |
accaagtctatcaaaaaggtccatattttaaaactgagaagaaagctaggtgttgtagcttttgaaagtttaaattaagaaagcatgttgagattaat |
4783293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 4787287 - 4787391
Alignment:
| Q |
225 |
gcagggaatatntgatggacccnattgtccgataaattctaaagatacnaatcattgtgtgttaatagngggttatgattcaatagacggccaagattct |
324 |
Q |
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||||||||||| |||||||||| |||||||| | |||||||||||||| ||||||||||| ||||||| ||||||||||||| | || || ||||||| | |
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| T |
4787287 |
gcagggaatatatgatggacccaattgtccggtgaattctaaagatacaaatcattgtgtattaatagtgggttatgattcagtggatggtcaagattat |
4787386 |
T |
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| Q |
325 |
tggat |
329 |
Q |
| |
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||||| |
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|
| T |
4787387 |
tggat |
4787391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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