View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_18_36 (Length: 603)
Name: 108_18_36
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_18_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 50 - 603
Target Start/End: Complemental strand, 47798646 - 47798081
Alignment:
| Q |
50 |
attaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagcatc |
149 |
Q |
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| T |
47798646 |
attaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagcatc |
47798547 |
T |
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| Q |
150 |
gctatgcttcgatgtgtggccaaatatcttgaaatgacagaagattattcgg------------taggaataaccgattcttacttgaatgaagttgcac |
237 |
Q |
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| T |
47798546 |
actatgcttcgatgtgtggccaaatatcttgaaatgacagaagattattcggacagaaatatggtaggaagaaccgattcttacttgaatgaagttgcac |
47798447 |
T |
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| Q |
238 |
tcaagagcatgtcaggggcaatatccatcttacatacatcagaaactcttcttccaattgcaaagaaagcaaaattagttagcagatgcataaatgcaat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798446 |
tcaagagcatgtcaggggcaatatccatcttacatacatcagaaactcttcttccaattgcaaagaaagcaaaattagttagcagatgcataaatgcaat |
47798347 |
T |
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| Q |
338 |
agcctgcctacatagctttccaaggagagccactttggttcatctggtagaagtgatggtagtagcaatgaaagagagatgagttcttccaatgcttctc |
437 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798346 |
agcctgcctacatagctttccaaggagagtcactttggttcatctggtagaagtgatggtagtagcaatgaaagagagatgagttcttccaatgcttctc |
47798247 |
T |
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| Q |
438 |
accagaggccagctattgattggtgggctgaagatctaactgttcttagaattgactttttccaaagagttctaattgcaatgattataatgctttattc |
537 |
Q |
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| T |
47798246 |
accagaggccagctattgattggtgggctgaagatctaactgttcttagaattgtctttttccaaagagttctaattgcaatgattataatgctttattc |
47798147 |
T |
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| Q |
538 |
acaaaaatctctgagaggnttggtaagtctctttactaaagaaggaaagttttcacncatcagttt |
603 |
Q |
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| T |
47798146 |
acaaaaatctctgagaggtttggtaagtccctttactaaagaaggaaagttttcacacatcagttt |
47798081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 50 - 522
Target Start/End: Original strand, 39777497 - 39777976
Alignment:
| Q |
50 |
attaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagcatc |
149 |
Q |
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||||||||||||||| || ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||| |
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| T |
39777497 |
attaattgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgggataaacttcgaaataagcgtcgaaaacatc |
39777596 |
T |
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| Q |
150 |
gctatgcttcgatgtgtggccaaatatcttgaaatgacagaagattattcggt------------aggaataaccgattcttacttgaatgaagttgcac |
237 |
Q |
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| T |
39777597 |
gctatgcttcgatgtgtagccgagtatcttgaaatgacagaagattattcggtcggaaatttggtaggaagaactgattcttacttgaatgaagttgcac |
39777696 |
T |
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| Q |
238 |
tcaagagcatgtcaggggcaatatccatcttacatacatcagaaactcttcttccaattgcaaagaaagcaaaattagttagcagatgcataaatgcaat |
337 |
Q |
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| T |
39777697 |
tcaagagcatgtcaggggcaatatccatcttacatacatcagaaacacttcttccaattgcagagaaagcaaaattagttagcagatgcatagatgcaat |
39777796 |
T |
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| Q |
338 |
agcctgcctacatagctttccaaggagagccactttggttcatctggtagaagtgatggtagtagcaatgaaagagagatgagttcttccaatgcttctc |
437 |
Q |
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| T |
39777797 |
agccttc----atagctt-ccaaggagagtcagtttggttcatctggtagaagtgatggtagtagcaatgaaagagtgatgaattcttccgctgcttctc |
39777891 |
T |
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| Q |
438 |
accagaggccagctattgattggtgggctgaagatctaactgttcttagaattgactttttccaaagagttctaattgcaatgat |
522 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39777892 |
accaaaggccagctgttgattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagttctaattgcaatgat |
39777976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 521 - 592
Target Start/End: Original strand, 39778011 - 39778082
Alignment:
| Q |
521 |
attataatgctttattcacaaaaatctctgagaggnttggtaagtctctttactaaagaaggaaagttttca |
592 |
Q |
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| T |
39778011 |
attataatgctttattcacagaaatctctgagaggtttggtaagtccctttactaaagaaggaaaattttca |
39778082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 5677888 - 5677762
Alignment:
| Q |
73 |
ctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagcatcgctatgcttcgatgtgtggccaa |
172 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||| ||| | ||||| || || |||| || |||| ||||||||||||||||||||||||| | |
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| T |
5677888 |
ctggtggagcagaagcatttgaactagcagcaaaattctgctacggtataaatttcgagataaatgtggaaaacatcgctatgcttcgatgtgtggccga |
5677789 |
T |
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| Q |
173 |
atatcttgaaatgacagaagattattc |
199 |
Q |
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| T |
5677788 |
atatcttgagatgacagaagattattc |
5677762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 434 - 522
Target Start/End: Complemental strand, 5677523 - 5677435
Alignment:
| Q |
434 |
tctcaccagaggccagctattgattggtgggctgaagatctaactgttcttagaattgactttttccaaagagttctaattgcaatgat |
522 |
Q |
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| T |
5677523 |
tctcaacagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgat |
5677435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 5677685 - 5677612
Alignment:
| Q |
264 |
atcttacatacatcagaaactcttcttccaattgcaaagaaagcaaaattagttagcagatgcataaatgcaat |
337 |
Q |
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| T |
5677685 |
atcttacatatttcagaaagccttcttccaatagcagagaaaacaaaattggtgagcaaatgcatagatgcaat |
5677612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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