View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 108_18_50 (Length: 236)
Name: 108_18_50
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_18_50 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 35449166 - 35448932
Alignment:
| Q |
2 |
tggagacctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcatggaga |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449166 |
tggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcatggaga |
35449067 |
T |
|
| Q |
102 |
tttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagttcttct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449066 |
tttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagttcttct |
35448967 |
T |
|
| Q |
202 |
cctagcatgtttggtgttgatgaaaatgtcatgga |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448966 |
cctagcatgtttggtgttgatgaaaatgtcatgga |
35448932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 35449339 - 35449163
Alignment:
| Q |
60 |
tggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaat |
159 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
35449339 |
tggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaaggaattaat |
35449240 |
T |
|
| Q |
160 |
ggggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatgga |
236 |
Q |
| |
|
| ||| || |||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||| |
|
|
| T |
35449239 |
gagggaatagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtattgatgaaaatgtcctgga |
35449163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 35448936 - 35448744
Alignment:
| Q |
1 |
atggagacctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcatggag |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||| |||||||| || ||| ||| |||||| |||||| ||||||||| ||||||||||| |||| |
|
|
| T |
35448936 |
atggagacctgcccaattgtcaggaatgcatcagctatgccaatctatagtaatggt---ggatcatcatttcatatggttgagatgtctgctcacggag |
35448840 |
T |
|
| Q |
101 |
atttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagtt |
196 |
Q |
| |
|
|| ||| |||||||||| ||||||||||||| ||||||| ||| || |||||| |||||||| |||||||||| | ||||||||||| |||||| |
|
|
| T |
35448839 |
atattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagtt |
35448744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 35441087 - 35440925
Alignment:
| Q |
61 |
ggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatg |
160 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||||||| || |||||||| || || ||||||||| ||||||||| | ||||||||| |||||| |
|
|
| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
161 |
gggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatg |
223 |
Q |
| |
|
|||| ||| ||||| | ||||||| || |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatg |
35440925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 35440850 - 35440702
Alignment:
| Q |
82 |
gatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaac |
181 |
Q |
| |
|
||||||| || ||| |||||| || |||||||| ||||| ||| ||| | ||||||||| | ||||||||||| ||||| |||||| || | || ||| |
|
|
| T |
35440850 |
gatatgtttgttcaaggagatattccaagcatggcttatactcataacacaaacatgggtgtgcaacaaggaatcaatggtgggatgaacacatcaaaac |
35440751 |
T |
|
| Q |
182 |
ctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgt |
230 |
Q |
| |
|
||| |||| |||||| ||||||| ||||||||||| | ||| |||||| |
|
|
| T |
35440750 |
ctggatattcaagttattctcctcacatgtttggtgctcatggaaatgt |
35440702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 35454565 - 35454520
Alignment:
| Q |
68 |
catttcgtatggttgatatgtctgctcatggagatttttcaagcat |
113 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
35454565 |
catttggtatggttgataagtctgctcatggagatatttcaagcat |
35454520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9152 times since January 2019
Visitors: 7893