View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_18_57 (Length: 391)
Name: 108_18_57
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] 108_18_57 |
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[»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 18621113 - 18621278
Alignment:
Q |
1 |
ggtttctcatgagtgggaactcatcaacaagcagaagccaatctggctgcgcaagccagaagagatcaccaaggatgaatatgctgctttctacaagagc |
100 |
Q |
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T |
18621113 |
ggtttctcatgagtgggaactcatcaacaagcagaagccaatctggctgcgcaagccagaagagatcaccaaggatgaatatgctgctttctacaagagc |
18621212 |
T |
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Q |
101 |
ctaaccaatgactgggaagaacacttggctgtgaagcatttctctgtggagggccagcttgaattc |
166 |
Q |
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T |
18621213 |
ctaaccaatgactgggaagaacacttggctgtgaagcatttctctgtggagggccagcttgaattc |
18621278 |
T |
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Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 227 - 389
Target Start/End: Original strand, 18620953 - 18621115
Alignment:
Q |
227 |
aattcattagttacccaatctacctttggactgaaaagactactgagaaagagatcagtgatgatgaagatgacgagcccaagaaggaagaagaaggtgt |
326 |
Q |
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T |
18620953 |
aattcattagctacccaatctacctttggactgaaaagactactgagaaagagatcagtgatgatgaagatgatgagcccaagaaggaagaagaaggtgt |
18621052 |
T |
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Q |
327 |
ggtcgaggaagttgatgaggacaaggagaangatgccaagaagaaaaagaagattaaggaggt |
389 |
Q |
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T |
18621053 |
ggtcgaggaagttgatgaggacaaggagaaagatgccaagaagaaaaagaagattaaggaggt |
18621115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 389
Target Start/End: Complemental strand, 45061912 - 45061752
Alignment:
Q |
229 |
ttcattagttacccaatctacctttggactgaaaagactactgagaaagagatcagtgatgatgaagatgacgagcccaagaaggaagaagaaggtgtgg |
328 |
Q |
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T |
45061912 |
ttcattagctacccaatctacctctggactgagaagacaactgagaaagagattagtgatgatgaggatgatgaacccaagaaggaagaggaaggagatg |
45061813 |
T |
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Q |
329 |
tcgaggaagttgatgaggacaaggagaangatgccaagaagaaaaagaagattaaggaggt |
389 |
Q |
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T |
45061812 |
ttgaggatgtagatgaagggaaggagaaagattcaaagaagaaaaagaagattaaggaggt |
45061752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 45061754 - 45061593
Alignment:
Q |
1 |
ggtttctcatgagtgggaactcatcaacaagcagaagccaatctggctgcgcaagccagaagagatcaccaaggatgaatatgctgctttctacaagagc |
100 |
Q |
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T |
45061754 |
ggtttctcatgagtggcaacaaatcaacaaacagaaaccaatttggttgcgtaagccagaagagattacaaaggatgagtatgcttcattctacaagagc |
45061655 |
T |
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Q |
101 |
ctaaccaatgactgggaagaacacttggctgtgaagcatttctctgtggagggccagcttga |
162 |
Q |
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T |
45061654 |
attactaatgattgggaagaacacttggctgttaagcacttttctgtggagggtcaacttga |
45061593 |
T |
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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 3162564 - 3162492
Alignment:
Q |
158 |
cttgaattcgggccttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
230 |
Q |
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T |
3162564 |
cttgaattcgggccttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
3162492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 18991740 - 18991799
Alignment:
Q |
171 |
cttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
230 |
Q |
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T |
18991740 |
cttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
18991799 |
T |
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Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 18959833 - 18959892
Alignment:
Q |
171 |
cttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
230 |
Q |
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T |
18959833 |
cttcttttcacaatcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
18959892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 13225709 - 13225781
Alignment:
Q |
158 |
cttgaattcgggccttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
230 |
Q |
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T |
13225709 |
cttgaattcgggccttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
13225781 |
T |
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Target: scaffold0625 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 5020 - 4961
Alignment:
Q |
171 |
cttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
230 |
Q |
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T |
5020 |
cttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
4961 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 1540624 - 1540695
Alignment:
Q |
158 |
cttgaattcgggccttcttttcacactcttacgcatatgaaaataatggacaaaatgggatttggattcaatt |
230 |
Q |
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T |
1540624 |
cttgatttcaggccttcttttcacactcttacgcatatgaaaataattaac-aaattggatttggattcaatt |
1540695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 42166112 - 42166012
Alignment:
Q |
53 |
aagccagaagagatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtgaagcatttctctgtggagg |
152 |
Q |
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T |
42166112 |
aagcccgaggagattacaaaggatgagtatgctgctttttacaagagtctcaccaatgattgggaagagcatttggctgttaagcacttctcagttgagg |
42166013 |
T |
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Q |
153 |
g |
153 |
Q |
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T |
42166012 |
g |
42166012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 42176753 - 42176653
Alignment:
Q |
53 |
aagccagaagagatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtgaagcatttctctgtggagg |
152 |
Q |
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T |
42176753 |
aagcccgaggagattacaaaggatgagtatgctgctttttacaagagtctcaccaatgattgggaagagcatttggctgttaagcacttctcagttgagg |
42176654 |
T |
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Q |
153 |
g |
153 |
Q |
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T |
42176653 |
g |
42176653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 34389640 - 34389584
Alignment:
Q |
172 |
ttcttttcacactctt-acgcatatgaaaataatggacaaaatgggatttggattca |
227 |
Q |
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||||| |||||||||| | |||||||||||||||||||||||| |||| | |||||| |
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T |
34389640 |
ttcttgtcacactctttatgcatatgaaaataatggacaaaattggatattgattca |
34389584 |
T |
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