View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_18_6 (Length: 287)
Name: 108_18_6
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_18_6 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 49308528 - 49308686
Alignment:
| Q |
1 |
cagaagataacgaaagggaaacctagaaaatcaaaggg-atgttactaaggactttagcaattgtggaagaaaaagacacaaacatgcaattttttacta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49308528 |
cagaagataacgaaagggaaacctagaaaatcaaaggggatgtttctaaggactttaacaattgtggaagaaaaagacacgaacatgcaattttttacta |
49308627 |
T |
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| Q |
100 |
tgataatagtacccacgagataaagaaggatgtcaagtgaaagaaaattaaaaattaat |
158 |
Q |
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| T |
49308628 |
tgataatagtacccacgagataaagaaggatgtcaagtgaaagaaaattaaaaattaat |
49308686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 49308396 - 49308532
Alignment:
| Q |
151 |
aaattaatgttggcataaattcatgggatttttgtttgagaaagttctgttgtttgaatttcatagtttttataaaattgcacttgataattatttgctt |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49308396 |
aaattaatgttggcataaattcatgggatttttgtatgagaaagttctgttgtttgaatttcatagtttttataaaattgcacttgataattatttgctt |
49308495 |
T |
|
| Q |
251 |
ggatatgataattttaggttgttagatatgcacagaa |
287 |
Q |
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| T |
49308496 |
ggatatgataattttaggttgttagatatgcacagaa |
49308532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41609909 - 41610067
Alignment:
| Q |
1 |
cagaagataacgaaagggaaacctagaaaatcaaaggg-atgttactaaggactttagcaattgtggaagaaaaagacacaaacatgcaattttttacta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41609909 |
cagaagataacgaaagggaaacctagaaaatcaaaggggatgtttctaaggactttaacaattgtggaagaaaaagacacaaacatgcaatttcttacta |
41610008 |
T |
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| Q |
100 |
tgataatagtacccacgagataaagaaggatgtcaagtgaaagaaaattaaaaattaat |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41610009 |
tgataatagtacccacgagataaagaaggatgtcaagtgaaagaaaattaaaatttaat |
41610067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 41609777 - 41609913
Alignment:
| Q |
151 |
aaattaatgttggcataaattcatgggatttttgtttgagaaagttctgttgtttgaatttcatagtttttataaaattgcacttgataattatttgctt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41609777 |
aaattaatgttggcataaattcatgggatttttgtttgagaaagttctgttgtttgaatttcataatttttataaaattgcacttgataattatttgctt |
41609876 |
T |
|
| Q |
251 |
ggatatgataattttaggttgttagatatgcacagaa |
287 |
Q |
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| T |
41609877 |
ggatatgataattttaggttgttagatatgcacagaa |
41609913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 18862371 - 18862304
Alignment:
| Q |
8 |
taacgaaagggaaacctagaaaatcaaagggatgttactaaggactttagcaattgtggaagaaaaaga |
76 |
Q |
| |
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|||||||| |||||||||||||||||||||| | || ||||||| || | |||||||| |||||||||| |
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| T |
18862371 |
taacgaaatggaaacctagaaaatcaaaggggtttttctaagga-ttgaacaattgtgaaagaaaaaga |
18862304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 25230099 - 25230032
Alignment:
| Q |
8 |
taacgaaagggaaacctagaaaatcaaagggatgttactaaggactttagcaattgtggaagaaaaaga |
76 |
Q |
| |
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|||||||| |||||||||||||||||||||| | || ||||||| || | |||| ||| |||||||||| |
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| T |
25230099 |
taacgaaatggaaacctagaaaatcaaaggggtttttctaagga-ttgaacaatcgtgaaagaaaaaga |
25230032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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