View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_19_1 (Length: 441)
Name: 108_19_1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_19_1 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 196 - 440
Target Start/End: Original strand, 45632463 - 45632707
Alignment:
| Q |
196 |
ggggatgctccaagtttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtggaagact |
295 |
Q |
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| T |
45632463 |
ggggatgctccaagtttgagactgcatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaagact |
45632562 |
T |
|
| Q |
296 |
taatgcactctatgttccttccttaatttgctgcctttatttangtctttgatattgnattttacggctaagtagttgctccattttttgtcacgttgct |
395 |
Q |
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||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
45632563 |
taatgcattctttgttccttccttaatttactgcctttatttatgtctttgatattgtattttacgggtaagtagttgctccattttttgtcacgctgct |
45632662 |
T |
|
| Q |
396 |
aacacaattttgagaagagngtgctctactatatatangaagcat |
440 |
Q |
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| T |
45632663 |
aacacaattttgagaagagtgtgttctactatatatatgaagcat |
45632707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 45632286 - 45632364
Alignment:
| Q |
20 |
attaatttactccttaatttattctttaataactagagtgactgtggcagttaaggtgtcgccggtttgacattatggg |
98 |
Q |
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| T |
45632286 |
attaatttactcattcatttgttctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg |
45632364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 194 - 440
Target Start/End: Complemental strand, 53159517 - 53159271
Alignment:
| Q |
194 |
atggggatgctccaagtttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtggaaga |
293 |
Q |
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| T |
53159517 |
atggggatgctccaagtttgagactgcatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtgaaaga |
53159418 |
T |
|
| Q |
294 |
cttaatgcactctatgttccttccttaatttgctgcctttatttangtctttgatattgnattttacggctaagtagttgctccattttttgtcacgttg |
393 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| || |
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| T |
53159417 |
cttaatgcattctttgttccttccttaatttgctgcctttatttttgtctttgatattgtaatttacggctaagtagttgctccattttttgtcacgctg |
53159318 |
T |
|
| Q |
394 |
ctaacacaattttgagaagagngtgctctactatatatangaagcat |
440 |
Q |
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||||||||||||||| ||||| ||| ||||||||||||| ||||||| |
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| T |
53159317 |
ctaacacaattttgaaaagagtgtgttctactatatatatgaagcat |
53159271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 53159689 - 53159611
Alignment:
| Q |
20 |
attaatttactccttaatttattctttaataactagagtgactgtggcagttaaggtgtcgccggtttgacattatggg |
98 |
Q |
| |
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|||||||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
53159689 |
attaatttactctttcatttgttctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg |
53159611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 194 - 438
Target Start/End: Original strand, 7368784 - 7369028
Alignment:
| Q |
194 |
atggggatgctccaagtttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtggaaga |
293 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |
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| T |
7368784 |
atggggatgctccaagtttgagactgcatctgtaactactggcccatggattggaatgaatgatttttttgactcaatatttcttctctggagtgaaaga |
7368883 |
T |
|
| Q |
294 |
cttaatgcactctatgttccttccttaatttgctgcctttatttangtctttgatattgnattttacggctaagtagttgctccattttttgtcacgttg |
393 |
Q |
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||||||||| ||| | |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
7368884 |
cttaatgcattctttattccttccttaatttgttgcctttatttatgtctttgatattgtattttacggctaagtagttgctccattttttgtcacgctg |
7368983 |
T |
|
| Q |
394 |
ctaacacaattttgagaagagngtgctctactatatatangaagc |
438 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
7368984 |
ctaacacaattttgagaagagtgtgttctactatatatatgaagc |
7369028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 7368608 - 7368686
Alignment:
| Q |
20 |
attaatttactccttaatttattctttaataactagagtgactgtggcagttaaggtgtcgccggtttgacattatggg |
98 |
Q |
| |
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|||||||||||| || |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7368608 |
attaatttactctttcatttgttctttaataactatagtgaccgtggcagttaaggtgtcgccggtttgacattatggg |
7368686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 210 - 432
Target Start/End: Original strand, 39905947 - 39906168
Alignment:
| Q |
210 |
tttgagactccatctgtaactactggcccatggattggaatgaatgacttttttgactcaatatttcttctatggagtggaagacttaatgcactctatg |
309 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| || ||| || |
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| T |
39905947 |
tttgagactgcatctgtaactactgacccatggattggaatgaatgagttttttgactcaatatttcttctatggagtgaaaaacttaagacattctttg |
39906046 |
T |
|
| Q |
310 |
ttccttccttaatttgctgcctttatttangtctttgatattgnattttacggctaagtagttgctccattttttgtcacgttgctaacacaattttgag |
409 |
Q |
| |
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|| |||||||||||| || |||| || | ||||||||||||| | ||||||||||||| |||||||||||| || ||||| | ||||||| ||||||| |
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| T |
39906047 |
ttggttccttaatttgttgtctttgttcatgtctttgatattgta-tttacggctaagtggttgctccatttgttctcacgcgggtaacacacttttgag |
39906145 |
T |
|
| Q |
410 |
aagagngtgctctactatatata |
432 |
Q |
| |
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|| || | | ||||||||||||| |
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| T |
39906146 |
aatagtgcgttctactatatata |
39906168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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