View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_19_16 (Length: 429)
Name: 108_19_16
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_19_16 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 52584477 - 52584059
Alignment:
| Q |
1 |
ctgagatgagtcacacaagacatttgatggatctacttggtgcagcaaacgagaataatcaccagacacaacaaggcctatccctttctttaggctctca |
100 |
Q |
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| T |
52584477 |
ctgagatgagtcacacaagacatttgatggatctacttggtgcagcaaacgagaataatcaccagacacaacaaggcctatccctttctttaggctctca |
52584378 |
T |
|
| Q |
101 |
catgcttgttgatgaatacagaaaccgttccttaaatcaaggtcttatgatcaatccaagttacttcatgcctggtcaagatcagacacgtgagccttgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584377 |
catgcttgttgatgaatacagaaaccgttccttaaatcaaggtcttatgatcaatccaagttacttcatgcctggtcaagatcagacacgtgagccttgt |
52584278 |
T |
|
| Q |
201 |
aatcaacctgtggtggagaatctaacaagtgattattttttcagtggtggaagtggaacttttgcttcaggttctaataataataactcattattattga |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584277 |
aatcaacctgtggtggagaatctaactagtgattattttttcagtggtggaagtggaacttttgcttcaggttctaataataataactcattattattga |
52584178 |
T |
|
| Q |
301 |
accgttctacttctacttcttatggaagtgagagttttggttccgttattggganctctagataccttaaaccngtacagtcacttcntgaagatcntgn |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||| || |
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| T |
52584177 |
accgttctacttctacttcttatggaagtgagagttttggttctgttattgggaactctagataccttaaaccagtacagtcacttcttgaagatcttgt |
52584078 |
T |
|
| Q |
401 |
tgatgtttggnggaaatgtg |
420 |
Q |
| |
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||||| |||| ||||||||| |
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|
| T |
52584077 |
tgatg-ttggtggaaatgtg |
52584059 |
T |
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