View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_21_1 (Length: 484)
Name: 108_21_1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_21_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 9630192 - 9630548
Alignment:
| Q |
1 |
aaaacttaacctcaacatcagcaaccgaagacgttgnantttccgacaagttcgttgatgttgtcgttgatcgaagangctgaanaagttgnagatggct |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| |
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| T |
9630192 |
aaaacttaacctcaacatcagcaaccaaagacgttgaa-tttccgacaagttcgttgatgttgtcgttgatcgaagaagctgaagaagttggagatggct |
9630290 |
T |
|
| Q |
101 |
cagatgaaaggtaaccaccacattgttgcaaccattggtatggagttcttggactaattgggaagattattctaggacttggtggtaaaggtcttggact |
200 |
Q |
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| T |
9630291 |
cagatgaaaggtaaccaccacattgttgcaaccattgggatggagttcttggactaattgggaagattattctaggacttggtggtaaaggtcttggact |
9630390 |
T |
|
| Q |
201 |
tggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttgangtaactcgttgatgtaatcnattacactttcnactattgat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
9630391 |
tggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttgatgtaactcgttgatgtaatcaattacactttcaactattgat |
9630490 |
T |
|
| Q |
301 |
gcttgatctcccctaaaccatataggagagtaattagttgcatttttcntaccaaaaaa |
359 |
Q |
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| T |
9630491 |
gcttgatct-ccctaaaccatataggagagtaattagttgcatttttcatacaaaaaaa |
9630548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 460
Target Start/End: Original strand, 9629574 - 9629672
Alignment:
| Q |
359 |
attaatggaccgaanttgaaaacataaataacaattancacacatganncntgcatactcnaatcattagctgctatgaanttaaataanccatattgga |
458 |
Q |
| |
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||||||||||| || ||||||||||||||||| |||| ||||||||| | ||||||||| ||||||||||||||||||| |||||||| | |||||||| |
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| T |
9629574 |
attaatggaccaaaattgaaaacataaataac-attaacacacatgatacatgcatactc-aatcattagctgctatgaa-ttaaataaacaatattgga |
9629670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 41257695 - 41257575
Alignment:
| Q |
192 |
tcttggacttggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttgangtaactcgttgatgtaatcnattacactttcn |
291 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||||||| ||| ||| ||| |||||||| | ||||| |||||||||| | ||||| | | |
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| T |
41257695 |
tcttggacttagtacttcactgtatacttttctttgtttcttggcttcaagggcttggagtagttgttgcaactctgtgatgtaatcaactacacctcca |
41257596 |
T |
|
| Q |
292 |
actattgatgcttgatctccc |
312 |
Q |
| |
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| ||||||||||||||||||| |
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|
| T |
41257595 |
attattgatgcttgatctccc |
41257575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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