View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_21_12 (Length: 537)
Name: 108_21_12
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_21_12 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 30414626 - 30414763
Alignment:
| Q |
2 |
ttacatacacagctctatttttcaataacatgattataaatgtagcttacatgttatattagatcagaaatgattcttggacatttnnnnnnntcgtgtg |
101 |
Q |
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| T |
30414626 |
ttacttacacagctctatttttcaataacatgattataaatgtagcttacatgttatattagatcagaaatgattcttggacatttaaaaaaatcgggtg |
30414725 |
T |
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| Q |
102 |
ctagctgtagctcttctttgatttttgtttgcattttt |
139 |
Q |
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| T |
30414726 |
ctagctgtagctcttctttgatttttgtttgcattttt |
30414763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 350 - 487
Target Start/End: Original strand, 30415040 - 30415176
Alignment:
| Q |
350 |
atgatttaagcatccttgattaaatatatatcgagtgcagancaatacntaacaaagagatacccaaaagagaactactaaaagctgttaaattggagct |
449 |
Q |
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| T |
30415040 |
atgatttaagcatccttgattaaatatatatcgagtgcagaaaaatacataacaaagagatacc-aaaagagaactactaaaagcggttaaattggagct |
30415138 |
T |
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| Q |
450 |
tgaaggggatgacatagctataacnangggaagattac |
487 |
Q |
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| T |
30415139 |
tgaaggggatgacatagctataaataagggaagattac |
30415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 30414751 - 30414831
Alignment:
| Q |
205 |
tgtttgcatttttattnaaccattttaggaatagaatgaaataggtaatcgnanacaatatatggaagatttcaccttaca |
285 |
Q |
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| T |
30414751 |
tgtttgcatttttatttaaccattttaggaatagaatgaaataggtaatcgcacagaatatatggaagatttcaccttaca |
30414831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 30414831 - 30414875
Alignment:
| Q |
316 |
acttccatattttcctaatcagaattat-aaagctatgatttaag |
359 |
Q |
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| T |
30414831 |
acttccatattttcctaatcagaattataaaagctatgatttaag |
30414875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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