View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_21_5 (Length: 430)
Name: 108_21_5
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_21_5 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 3916265 - 3915844
Alignment:
| Q |
1 |
ggaagtgtttacgaacccgaagggtatggaggttttccgttaccaccgccgccgacgtttataacttgcttgttttggtatnaactttgtttgttttggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3916265 |
ggaagtgtttacgaacccgaagggtatggaggttttccgttaccaccgccgccgacgtttataacttgcttgttttggtataaactttgtttgttttggc |
3916166 |
T |
|
| Q |
101 |
ctttgttttgccctgattatcaaaagatgtgtctttattacaaagccacagaagaagaagaagctggtccaaatgctcaaagcgtggctaaatcccctaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
3916165 |
ctttgttttgtcctgattatcaaaagatgtgtctttattacaaagccacagaagaagaag---ctggtccaaatgctcaaaccgtggctaaatcccctaa |
3916069 |
T |
|
| Q |
201 |
tgttccatgatttcataatgttgctatatggcttgtgtgttatagatatctatatgtttgaagtgtgattctgaaagtattattataatatcaaaattaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3916068 |
tgttccatgatttcataatgttgctatatggcttgtgtgttatagatatctatatgtttgaagtgtgattgtgaaagtattattataatatcaaaattaa |
3915969 |
T |
|
| Q |
301 |
atatagctaattataaataacttaanaggcctccactatagttgtgtgccttacntanatttttaatttgtggcatgtatttgcatcccttgttccatgc |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||| |
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| T |
3915968 |
atatagctaattataaataacttaataggcctccactatagttgtgtgccttacttagatttttaatttgtggcatgtatttgtat-ccttgttccatgc |
3915870 |
T |
|
| Q |
401 |
atatcactgttatatgctatgattga |
426 |
Q |
| |
|
|||||| ||||||||||||||||||| |
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|
| T |
3915869 |
atatcattgttatatgctatgattga |
3915844 |
T |
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