View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_21_57 (Length: 507)
Name: 108_21_57
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_21_57 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 36457548 - 36457105
Alignment:
| Q |
1 |
cgaagaatagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgtttcttgcgattaaattcaacat |
100 |
Q |
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| T |
36457548 |
cgaagaatagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgtttcttgtgattaaattcaacat |
36457449 |
T |
|
| Q |
101 |
tgactgcagcctcttctgcaggagcttccacccgaaaacctggactttcgacacatcgccaaattaggtgatatgctgctctaaactcgtcgcctgcata |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
36457448 |
tgactgcagcctcttctgcaggagcttccacacgaaaacctggactttcgacacatcgccaaattaggtgatatgctactttaaactcgtcgcctgcata |
36457349 |
T |
|
| Q |
201 |
taaatctgacagcattctacatcagcttttgcagctgaatctctgcgtagattctagtttccagacccagtatcaggctggtcctgccttggagacgcgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36457348 |
taaatctgacagcattctacatcagcttttgcagctgaatctctgtgtagactctagtttccagacccagtatcaggctggtcctgccttggagacgctg |
36457249 |
T |
|
| Q |
301 |
acagcagcagcgtattcaaattctgcaccagtttaggccctcccaatcaatagcattacgcttccaagatagcctcctatgaccacccattattaatcca |
400 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36457248 |
acagcagcagcgtattcaaattctgcaccag-ttagg-cctcccaatcaatagcattacgcttccaagatagcct-ctatgaccacccattattaatcca |
36457152 |
T |
|
| Q |
401 |
ctcccctatgttgctaattatttcatgtgttagtagcttgttgaatt |
447 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36457151 |
ctcccctatgttgctaattatttcatgtgttagtaccttgttgaatt |
36457105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 507
Target Start/End: Complemental strand, 36457607 - 36457544
Alignment:
| Q |
444 |
aattgatactccaatccactgataaaactccaaacaaaccactaaacttcactgacagccgaag |
507 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
36457607 |
aattgacactccaatccactgataaaactccaaccaaaccacaaaacttcactgacagccgaag |
36457544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 11629593 - 11629672
Alignment:
| Q |
1 |
cgaagaatagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgttt |
80 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
11629593 |
cgaagaatagatgtttctcgctctaattattgtcggaacagaacacaaaggatgaattatgatctgcaggcctaatgttt |
11629672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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