View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_6_11 (Length: 312)
Name: 108_6_11
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_6_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 53000589 - 53000830
Alignment:
| Q |
71 |
attaattattagttttggaaaaacctttattgaccataaatcttctaagaatggaaagttacatatatgattattagaaagaaagtctcaaagtcttaaa |
170 |
Q |
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| T |
53000589 |
attaattattagttttggaaaaacctttattgaccataaatcttctaagaatggtaagttacatatatgattattagaaagaaagtctcaaagtcttaaa |
53000688 |
T |
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| Q |
171 |
tgtgaaactggactggtccatcatgttggtttatcacagtctttaaaagagactacccatgttctgtgaacgagatttgttagtatctggtaacaacagt |
270 |
Q |
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| T |
53000689 |
tgtgaaactgtactggtccatcatgttggtttatcacagtctttaaaagagactacccatgttctgtgaacgagatttgttagtatctggtaacaacagt |
53000788 |
T |
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| Q |
271 |
gaaactatctaacaaaaatgaggtatatattcaagtgaatat |
312 |
Q |
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| T |
53000789 |
gaaactatctaacaaaaatgaggtatatattcaagtgaatat |
53000830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 53000863 - 53000924
Alignment:
| Q |
19 |
accacggaacaaagaaagtgaccactgaccag--taatttatttcttctagctaattaatta |
78 |
Q |
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| T |
53000863 |
accacggaacaaagaaagtgaccactgaccagtataatttatttcttctagctaattaatta |
53000924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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