View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 108_6_52 (Length: 247)
Name: 108_6_52
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_6_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44370435 - 44370201
Alignment:
| Q |
1 |
agagattcctcgaaaagacgtgattttgacaagacattgttggaagtggttgctgtgttggaagntgaagtttcttgtttttgtttgggttgtaaataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44370435 |
agagattcctcgaaaagacgtgattttgacaagacattgttggaagtggttgctgtgttggaagttgaagtttcttgtttttgtttgggttgtaaataag |
44370336 |
T |
|
| Q |
101 |
ataattttcgggtttgtttaaatgcaacattactatcaaatgagagaacgtgtttgacttgatttgtagttgtatatattttgtggaaattagttcctag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44370335 |
ataattttcgggtttgtttaaatgcaacattactatcaaatgagagaacgtgtttgacttgatttgtagttgtatatattttgtggaaattagttcccag |
44370236 |
T |
|
| Q |
201 |
tttgtagttgttcatggcacaaaacggaacaattg |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44370235 |
tttgtagttgttcatggcacaaaacagaacaattg |
44370201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13749 times since January 2019
Visitors: 8302