View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 108_6_60 (Length: 428)
Name: 108_6_60
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_6_60 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 42918129 - 42917725
Alignment:
| Q |
17 |
caattgaatatcacatttcctttgtgttgacaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42918129 |
caattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
42918030 |
T |
|
| Q |
117 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccacaagat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42918029 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccacaagat |
42917930 |
T |
|
| Q |
217 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917929 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacg |
42917830 |
T |
|
| Q |
317 |
caccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917829 |
caccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
42917730 |
T |
|
| Q |
417 |
ggttg |
421 |
Q |
| |
|
||||| |
|
|
| T |
42917729 |
ggttg |
42917725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 416
Target Start/End: Original strand, 11166838 - 11166972
Alignment:
| Q |
282 |
aaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttcagaatcaa |
381 |
Q |
| |
|
|||| ||||||||| |||||||||| || |||| || | ||||||||||||||||||||||| || | | || |||||||| ||| ||| || || |
|
|
| T |
11166838 |
aaaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaactaa |
11166937 |
T |
|
| Q |
382 |
tgtgtgtttttgcattgtcttgttgaataaatatt |
416 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |
|
|
| T |
11166938 |
tgtgagttcttgcattgtcttgttgaataaatatt |
11166972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 23255019 - 23254615
Alignment:
| Q |
17 |
caattgaatatcacatttcctttgtgttgacaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23255019 |
caattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
23254920 |
T |
|
| Q |
117 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccacaagat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23254919 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccacaagat |
23254820 |
T |
|
| Q |
217 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23254819 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatcttaaacatttaaatcaggagagtttggtggttgacg |
23254720 |
T |
|
| Q |
317 |
caccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23254719 |
caccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
23254620 |
T |
|
| Q |
417 |
ggttg |
421 |
Q |
| |
|
||||| |
|
|
| T |
23254619 |
ggttg |
23254615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 115 - 416
Target Start/End: Original strand, 36913358 - 36913659
Alignment:
| Q |
115 |
ctttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccacaag |
214 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||| || | | ||| ||||||||||| || ||| |||| |||||| |
|
|
| T |
36913358 |
ctttcatgatttcaatcatacacaattgcaaacttaaaaatatacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaag |
36913457 |
T |
|
| Q |
215 |
atcatcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttga |
314 |
Q |
| |
|
|| |||||||| ||||| | |||||| |||||||| | ||||| | || || || |||||||| |||| ||||||||| |||||||||| || ||| |
|
|
| T |
36913458 |
ctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatagctctgaaaaatccaagatccaaaatatttaaatctggagagtttgcaggctga |
36913557 |
T |
|
| Q |
315 |
cgcaccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaata |
414 |
Q |
| |
|
| || | ||||||||||||||||||||||| || | | || |||||||| ||| ||| || |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
36913558 |
cacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaactaatgtgagttcttgcattgtcttgttgaataaata |
36913657 |
T |
|
| Q |
415 |
tt |
416 |
Q |
| |
|
|| |
|
|
| T |
36913658 |
tt |
36913659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 4755673 - 4755269
Alignment:
| Q |
17 |
caattgaatatcacatttcctttgtgttgacaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755673 |
caattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
4755574 |
T |
|
| Q |
117 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccacaagat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4755573 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccacaatat |
4755474 |
T |
|
| Q |
217 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755473 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacg |
4755374 |
T |
|
| Q |
317 |
caccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755373 |
caccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
4755274 |
T |
|
| Q |
417 |
ggttg |
421 |
Q |
| |
|
||||| |
|
|
| T |
4755273 |
ggttg |
4755269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 53535939 - 53535535
Alignment:
| Q |
17 |
caattgaatatcacatttcctttgtgttgacaattcctttcttctttctaattgttcttttttcatatgtggaatcttgtagttgtgggtaccttttact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535939 |
caattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttctttcttcatatgtggaatcttgtagttgtgggtaccttttact |
53535840 |
T |
|
| Q |
117 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccacaagat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535839 |
ttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccacaagat |
53535740 |
T |
|
| Q |
217 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53535739 |
catcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatcttaaacatttaaatcaggagagtttggtggttgacg |
53535640 |
T |
|
| Q |
317 |
caccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535639 |
caccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaatatt |
53535540 |
T |
|
| Q |
417 |
ggttg |
421 |
Q |
| |
|
||||| |
|
|
| T |
53535539 |
ggttg |
53535535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 418
Target Start/End: Original strand, 30460818 - 30460962
Alignment:
| Q |
274 |
caagatctaaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtgagnctacacgacgaaaatcttgatcttc |
373 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| ||||||| || |||||||| ||||||||| |||| | | | || |||||||| | ||| || |
|
|
| T |
30460818 |
caagatctaaaatatttaaatctggagaatttgccggttgacacattaaacgaatgtcaaatccactttgcaatgcggctcggcgaaaatcctcatcatc |
30460917 |
T |
|
| Q |
374 |
agaatcaatgtgtgtttttgcattgtcttgttgaataaatattgg |
418 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
30460918 |
acaatcaatatgtgttcttgcattgtcttgttgaatgaatattgg |
30460962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 10328659 - 10328585
Alignment:
| Q |
264 |
ctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatcca |
338 |
Q |
| |
|
||||| || ||||| ||||| ||||||| ||||||||| ||||| ||||||| || || ||||||||||||||| |
|
|
| T |
10328659 |
ctaaaaaacccaaggtctaagacatttagatcaggagaatttggaggttgacacattaagcgaatatcaaatcca |
10328585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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