View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_6_67 (Length: 432)
Name: 108_6_67
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_6_67 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 104 - 281
Target Start/End: Original strand, 6663731 - 6663908
Alignment:
| Q |
104 |
ttagtattttgagggatgggatcaaacttcgatcttcttatcacttcaatttctaactatgttcatcttaattatcaagctaactttacatatattgtta |
203 |
Q |
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| T |
6663731 |
ttagtattttgagggatgagatcaaacttccatcttcttatcacttcaatttctaactatgttcatcttaattatcaagctaactttatatatattgtta |
6663830 |
T |
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| Q |
204 |
aaggaannnnnnnattaaagagcnatgtactttgatttctaatttcattnnnnnnntgaatcaaaagtgttgtgaatt |
281 |
Q |
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| T |
6663831 |
aaggaatttttttattaaagagcaatgtactttgatttctaatttcattaaaaaaatgaatcaaaagtgttgtgaatt |
6663908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 6663640 - 6663672
Alignment:
| Q |
13 |
caattgtttatatgttgttgatattatgcacct |
45 |
Q |
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| T |
6663640 |
caattgtttatatgttgttgatattatgcacct |
6663672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 432
Target Start/End: Original strand, 44370202 - 44370350
Alignment:
| Q |
278 |
aattgttccgttttgtgccatgaacaactacaaactaggaactaatttccacnaaaatatatacnacctacnaatcaaggtcnaacccgttcncctcatn |
377 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||| |||||| ||| ||| ||||| ||||| |
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| T |
44370202 |
aattgttctgttttgtgccatgaacaactacaaactgggaactaatttccac-aaaatatatacaa-ctacaaatcaa-gtcaaacacgttct-ctcatt |
44370297 |
T |
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| Q |
378 |
tgataggtaatgttgcntttaaacaaccccgaaaattatccntatttncaaccca |
432 |
Q |
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| T |
44370298 |
tgata-gtaatgttgcatttaaacaaacccgaaaattat-cttatttacaaccca |
44370350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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