View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_6_8 (Length: 298)
Name: 108_6_8
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] 108_6_8 |
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[»] chr2 (12 HSPs) |
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[»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 132 - 298
Target Start/End: Original strand, 40520161 - 40520326
Alignment:
Q |
132 |
gttacattttgattggctgatatgtgtaatataaggnnnnnnntgcaatttatttaaacaatcggaggctttttataagnnnnnnntgcaaattatctgc |
231 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
T |
40520161 |
gttacattttgattggctgatatgtgtaatataag-aaaaaaatgcaatttatttaaacaatcggaggctttttataagaaaaaaatgcaaattatctgc |
40520259 |
T |
|
Q |
232 |
tcaaagacgatctttacatgaaatcaaaatgatatatcaattgccagccatttacaaaagttgtttg |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
40520260 |
tcaaagacgatctttacatgaaatcaaaatgatatatcaattgccagccatttacaaaagttgtttg |
40520326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 40495954 - 40496034
Alignment:
Q |
218 |
tgcaaattatctgctcaaagacgatctttacatgaaatcaaaatgatatatcaattgccagccatttacaaaagttgtttg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
40495954 |
tgcaaattatctgctcaaagacgatctttacatgaaatcaaaatgatatatcaattgccagccatttacaaaagttgtttg |
40496034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 40517963 - 40518040
Alignment:
Q |
53 |
accacctagatataattaaaagttaccttaagattaaaattgactcttttatttaacatttaatgttgtctatttata |
130 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||| |
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|
T |
40517963 |
accacctagatataattaaaagttatcttaagattaaaattgactcttttatttgacatctaatgttgcctatttata |
40518040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40520322 - 40520368
Alignment:
Q |
1 |
gtttgaatcagtggctggaaagaaaagtgaagaaagtgtaattaatc |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
40520322 |
gtttgaatcagtggctggaaagaaaagtgaagaaagtgtaattaatc |
40520368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 40495385 - 40495461
Alignment:
Q |
53 |
accacctagatataattaaaagttaccttaagattaaaattgactcttttatttaacatttaatgttgtctatttata |
130 |
Q |
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||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| |||||| |||||| ||||||||| |
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|
T |
40495385 |
accacctggatataattaaaggttaccttaggattaaa-ttgactcttttatttgacatttcatgttgcctatttata |
40495461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 3849927 - 3849843
Alignment:
Q |
67 |
attaaaagttaccttaagattaaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||||||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||| ||||||||||||||| |||||| |
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|
T |
3849927 |
attaaaagttaccttataaataaaattgactcattta-ttaacatttaatgttgtcaatgtata--ttacattttgattggttgatat |
3849843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40496030 - 40496070
Alignment:
Q |
1 |
gtttgaatcagtggctggaaagaaaagtgaagaaagtgtaa |
41 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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|
T |
40496030 |
gtttgaatcagtggctggaaagaaaagtgaagaaagtgtaa |
40496070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 33853077 - 33853027
Alignment:
Q |
70 |
aaaagttaccttaagattaaaattgactcttttatttaacatttaatgttg |
120 |
Q |
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|
|||| |||||||||||||||||||||||| |||||||||| |||||||||| |
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|
T |
33853077 |
aaaatttaccttaagattaaaattgactcatttatttaacttttaatgttg |
33853027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 6644652 - 6644595
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattgg |
147 |
Q |
|
|
||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| |
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|
T |
6644652 |
aaaattgactcatttatttgacatttaatgttgtctatgtata--ttacattttgattgg |
6644595 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 40495855 - 40495896
Alignment:
Q |
125 |
tttatacgttacattttgattggctgatatgtgtaatataag |
166 |
Q |
|
|
|||||| |||||||||||||||||||| |||||||||||||| |
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|
T |
40495855 |
tttatatgttacattttgattggctgaaatgtgtaatataag |
40495896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 6647236 - 6647300
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| ||||||||| ||||| || |||| ||||||||||||||| |||||| |
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|
T |
6647236 |
aaaattgactcatttatttgacatttaatattgtcaatatata--ttacattttgattggttgatat |
6647300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 42080844 - 42080910
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||||| |||| ||||||| ||||||||||||| |||| | || ||||||||||||||| |||||| |
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|
T |
42080844 |
aaaatttactcatttatttgacatttaatgttgcctatatgtatattacattttgattggttgatat |
42080910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 11078392 - 11078456
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| ||||||||||||||| || |||| ||||||||||||||| |||||| |
|
|
T |
11078392 |
aaaattgactcatttatttgacatttaatgttgtcaatgtata--ttacattttgattggttgatat |
11078456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 29390889 - 29390931
Alignment:
Q |
66 |
aattaaaagttaccttaagattaaaattgactcttttatttaa |
108 |
Q |
|
|
||||||||||||||||| |||||||||||| | |||||||||| |
|
|
T |
29390889 |
aattaaaagttaccttaggattaaaattgattattttatttaa |
29390931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 12499322 - 12499265
Alignment:
Q |
95 |
actcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||| |||||||||||||||||||| |||| |||| ||||||||||||||| |||||| |
|
|
T |
12499322 |
actcatttatttaacatttaatgttacctatgtata--ttacattttgattggttgatat |
12499265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 34402112 - 34402174
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||| |||||||||||||||| || |||| ||||||||||||||| |||||| |
|
|
T |
34402112 |
aaaattgactcatttat--aacatttaatgttgtcaatgtata--ttacattttgattggttgatat |
34402174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 37272673 - 37272735
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||| ||||||||||||||| || |||| |||||||||||||||||||||| |
|
|
T |
37272673 |
aaaattgactcatttatg--acatttaatgttgtcaatgtata--ttacattttgattggctgatat |
37272735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 30303044 - 30303108
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| ||||||||||||| |||| |||| ||||||||||||||| |||||| |
|
|
T |
30303044 |
aaaattgactcatttatttgacatttaatgttgcctatgtata--ttacattttgattggttgatat |
30303108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 52404586 - 52404522
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| |||||||||||||||||| |||| ||| ||||||||||| |||||| |
|
|
T |
52404586 |
aaaattgactcatttatttgacatttaatgttgtctatatata--ttatattttgattggttgatat |
52404522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 52407334 - 52407398
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| ||||||||||||||| || |||| ||||||||||||||| |||||| |
|
|
T |
52407334 |
aaaattgactcatttatttgacatttaatgttgtcaatgtata--ttacattttgattggttgatat |
52407398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 5328808 - 5328864
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattg |
146 |
Q |
|
|
||||||||||| ||||||| ||||||||||||||| || |||| |||||||||||||| |
|
|
T |
5328808 |
aaaattgactcatttatttgacatttaatgttgtcaatgtata--ttacattttgattg |
5328864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 12768224 - 12768161
Alignment:
Q |
89 |
aaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgat |
152 |
Q |
|
|
|||||||||| ||||||| ||||||||||||| ||| | || |||||||||||||||| |||| |
|
|
T |
12768224 |
aaattgactcatttatttgacatttaatgttgcctacgtgtatgttacattttgattggttgat |
12768161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 33006484 - 33006541
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattgg |
147 |
Q |
|
|
|||||||| || ||||||| |||||||||||||||||| |||| |||| |||||||||| |
|
|
T |
33006484 |
aaaattgattcatttatttgacatttaatgttgtctatgtata--ttactttttgattgg |
33006541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 6109 - 6173
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| ||||||||||||| |||| |||| ||| ||||||||||| |||||| |
|
|
T |
6109 |
aaaattgactcatttatttgacatttaatgttgcctatgtata--ttaaattttgattggttgatat |
6173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 18089469 - 18089533
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| |||||||||||||||||| |||| ||| ||||| ||||| |||||| |
|
|
T |
18089469 |
aaaattgactcatttatttgacatttaatgttgtctatgtata--ttatattttaattggttgatat |
18089533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 40618449 - 40618513
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| ||||||||||||||| || |||| |||||| |||||||| |||||| |
|
|
T |
40618449 |
aaaattgactcatttatttgacatttaatgttgtcaatgtata--ttacatgttgattggttgatat |
40618513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 17853386 - 17853443
Alignment:
Q |
95 |
actcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||| ||||||| |||||||||||| ||||| |||| ||||||||||||||| |||||| |
|
|
T |
17853386 |
actcatttatttgacatttaatgttatctatgtata--ttacattttgattggttgatat |
17853443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 8391554 - 8391498
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattg |
146 |
Q |
|
|
||||||||||| ||||||| ||||||||||||||| || ||| ||||||||||||||| |
|
|
T |
8391554 |
aaaattgactcatttatttgacatttaatgttgtcaatgtat--gttacattttgattg |
8391498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 46936267 - 46936331
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||||||||||||| |||| ||| |||| ||| ||||||||||| |||||| |
|
|
T |
46936267 |
aaaattgactcatttatttaacatttaatattgtttatgtata--ttagattttgattggttgatat |
46936331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 10934259 - 10934227
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttg |
120 |
Q |
|
|
||||||||||||||||||||||||| ||||||| |
|
|
T |
10934259 |
aaaattgactcttttatttaacattcaatgttg |
10934227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 10934303 - 10934271
Alignment:
Q |
70 |
aaaagttaccttaagattaaaattgactctttt |
102 |
Q |
|
|
||||||||||||||||||| ||||||||||||| |
|
|
T |
10934303 |
aaaagttaccttaagattagaattgactctttt |
10934271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 15287571 - 15287507
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| |||||||||||| || || |||| ||||||||||||||| |||||| |
|
|
T |
15287571 |
aaaattgactcatttatttgacatttaatgttatcaatgtata--ttacattttgattggttgatat |
15287507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 14103893 - 14103836
Alignment:
Q |
95 |
actcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||| ||||||| |||||||||||| ||||| |||| ||||||||||||||| |||||| |
|
|
T |
14103893 |
actcatttatttgacatttaatgttatctatgtata--ttacattttgattggttgatat |
14103836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 13861883 - 13861947
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
||||||||||| ||||||| | ||||||||||||| || |||| ||||||||||||||| |||||| |
|
|
T |
13861883 |
aaaattgactcatttatttgatatttaatgttgtcaatgtata--ttacattttgattggttgatat |
13861947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 50496198 - 50496238
Alignment:
Q |
67 |
attaaaagttaccttaagattaaaattgactcttttattta |
107 |
Q |
|
|
|||||||||||||| | |||||||||| ||||||||||||| |
|
|
T |
50496198 |
attaaaagttacctaatgattaaaattaactcttttattta |
50496238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 22428974 - 22429038
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||||||| || ||||||| ||||||||||||| |||| |||| ||||||||||||||| |||||| |
|
|
T |
22428974 |
aaaattgattcatttatttgacatttaatgttgcctatgtata--ttacattttgattggttgatat |
22429038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 53778405 - 53778469
Alignment:
Q |
88 |
aaaattgactcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||||||| || ||||||| ||||||||| |||||||| |||| ||||||||||||||| |||||| |
|
|
T |
53778405 |
aaaattgattcatttatttgacatttaatattgtctatgtata--ttacattttgattggttgatat |
53778469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 36465754 - 36465712
Alignment:
Q |
66 |
aattaaaagttaccttaagattaaaattgactcttttatttaa |
108 |
Q |
|
|
||||||||||||||||| |||||||||||| | |||||||||| |
|
|
T |
36465754 |
aattaaaagttaccttaggattaaaattgatttttttatttaa |
36465712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 27320961 - 27320904
Alignment:
Q |
95 |
actcttttatttaacatttaatgttgtctatttatacgttacattttgattggctgatat |
154 |
Q |
|
|
|||| ||||||| |||||||||||| ||||| |||| ||||||||||||||| |||||| |
|
|
T |
27320961 |
actcatttatttgacatttaatgttatctatgtata--ttacattttgattggttgatat |
27320904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 36471735 - 36471775
Alignment:
Q |
66 |
aattaaaagttaccttaagattaaaattgactcttttattt |
106 |
Q |
|
|
||||||||||||||||| |||||||||||| | |||||||| |
|
|
T |
36471735 |
aattaaaagttaccttaggattaaaattgatttttttattt |
36471775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 47911110 - 47911074
Alignment:
Q |
66 |
aattaaaagttaccttaagattaaaattgactctttt |
102 |
Q |
|
|
||||||||||||||||||||||| |||||| |||||| |
|
|
T |
47911110 |
aattaaaagttaccttaagattataattgattctttt |
47911074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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