View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_6_90 (Length: 485)
Name: 108_6_90
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_6_90 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 38747684 - 38747293
Alignment:
| Q |
1 |
aaaacatgggttatcttgaatctcttgatgttccagaggaacagaatcagcaacagtttattgcntcaccttcttcttcttttgatcatcaacaacattt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
38747684 |
aaaacatgggttatcttgaatctcttgatgttccagaggaacagaatcagcaacagtttattgtttcaccttcttcttcatttgatcatcaacaacattt |
38747585 |
T |
|
| Q |
101 |
caatattctttcacaatcaattcatcagaatttgacaccaagtttcaatgatgttgacaataacatcattaacaacaatatgaacatgtttttgggaaat |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38747584 |
caatattctttcacaatccattcatcagaatttgacaccaagtttcaatgatgttgacaataacatcattaacaacaatatgaacatgtttttgggaaat |
38747485 |
T |
|
| Q |
201 |
aacgacaaccttaataaggttgttggtggtggtgacgtcaatggtttgtcttgtcctgcgcctgatctcggatgggttaatgaactgcngatgtanaana |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || | |
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| T |
38747484 |
aacgacaaccttaataaggttgttggtggtggtgacgtcaatggtttgtcttgtcctgcccctgatctcggatgggttaatgaactgctgatgtagaaga |
38747385 |
T |
|
| Q |
301 |
gtgttgaattttgaagatggngcccaantggtgattatcagtggagtgaagtgtaaatattgnaggattaagcctatattacctatttatccc |
393 |
Q |
| |
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|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
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| T |
38747384 |
gtgttgaattttgaagatggtgccaaaatggtgattatcagtggagtgaagtgtaaatattgaaggattaag-ctatattacatatttatccc |
38747293 |
T |
|
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