View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_7_1 (Length: 457)
Name: 108_7_1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_7_1 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 433
Target Start/End: Original strand, 7949792 - 7950235
Alignment:
| Q |
5 |
caataccgatgtttgcagcaaaacatcctttggagtcaccctgattgtttctgaagat------------------gccagggttgccttgagaagcccc |
86 |
Q |
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| T |
7949792 |
caataccgatgtt--cagcaaaacatcctttggagtcaccctgattgtttctgaagattccagcgcaagcaaataagccagggttgccttgagaagcccc |
7949889 |
T |
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| Q |
87 |
atcagtgttgcatttaatccaattatgaataggagggtgccagagaacctccacaatttttggagcattaggagtgtaaggttcaattctgaagagcttt |
186 |
Q |
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| T |
7949890 |
atcagtgttgcatttaatccaattatgaataggagggtgccagagatcctccacaatttttggagcattaggaatgtgagtttcaattctgaa-agcttt |
7949988 |
T |
|
| Q |
187 |
caaaaccacaaagtctctgatggttgagctagttgctgcagatataaggttaccagataggttcacacttgcaatnatcanatttttagctgcaactaaa |
286 |
Q |
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| T |
7949989 |
caaaaccacaaagtctctgattgctgggctagttactgcagatataaggttaccagataggttcacacttgcaatgatcatgtttttagctgcaactaaa |
7950088 |
T |
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| Q |
287 |
tttggttngacattgttgaatttgaagttgtttctagagaaccatatgacatttatggtattgataaaagcagctgagatagtgagttagcttgagggct |
386 |
Q |
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| T |
7950089 |
tttggtttgacattgttgaatttgaagttgtttctagagaaccatatgacatttatggtattgataaaagcagttgagatagtgagttagcttgagggct |
7950188 |
T |
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| Q |
387 |
cgagcttctattacaagtatcaaatatattaaggatggaagacaaat |
433 |
Q |
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| T |
7950189 |
ccagcttctattacaagtatcaaatatattaaggatggaagacaaat |
7950235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 26448793 - 26448839
Alignment:
| Q |
64 |
ccagggttgccttgagaagccccatcagtgttgcatttaatccaatt |
110 |
Q |
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| T |
26448793 |
ccagggttgccttgagaagcaccatctgtattgcatttaatccaatt |
26448839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 24540812 - 24540739
Alignment:
| Q |
85 |
ccatcagtgttgcatttaatccaattatgaataggagggtgccagagaacctccacaatttttggagcattagg |
158 |
Q |
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| T |
24540812 |
ccatcagtattacatttgatccaatttttaatgggagggtgccagataacttctataatttttggagcattagg |
24540739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 34029487 - 34029544
Alignment:
| Q |
81 |
agccccatcagtgttgcatttaatccaattatgaataggagggtgccagagaacctcc |
138 |
Q |
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| T |
34029487 |
agccccatcacagttgcatttaatccatctctaaataggagggtgccagataacctcc |
34029544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 49142029 - 49142117
Alignment:
| Q |
68 |
ggttgccttgagaagccccatcagtgttgcatttaatccaattatgaataggagggtgccagagaacctccacaatttttggagcatta |
156 |
Q |
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| T |
49142029 |
ggttaccttgagagactccatcagtgttacatttgacccaattgtgaatgggagggtgcgtgaaaaccttcatgatttttggagcatta |
49142117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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