View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_7_49 (Length: 458)
Name: 108_7_49
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_7_49 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 139 - 458
Target Start/End: Original strand, 18397702 - 18398018
Alignment:
| Q |
139 |
gaattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgat |
238 |
Q |
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| T |
18397702 |
gaattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagcttgtgaaccaaggtcatctagatcaaagtttgaagatagtgat |
18397801 |
T |
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| Q |
239 |
atgtcacctcctcgacggaaacatgttagtaactcgagtccagcatatttcccctcctcgccgtcgtagtcatcanacatctggatccaatgggagnnnn |
338 |
Q |
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| T |
18397802 |
atgtcacctcctcgacggaaacatgttagtaattcgagtccag-atatttcccctcctcgccgtcgtagtcatcaaacatctggatccaatgggagaaaa |
18397900 |
T |
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| Q |
339 |
nnntatgaaactcctgatttggaagatctttctccncctagangtggncgtcatgattcccnctctcaagatactttacatggacaaggtgncatctgac |
438 |
Q |
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||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
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| T |
18397901 |
aaatatgaaacttctgatttggaagatctttctccacctagacgtggtcgtcatgattccccctctcaagatactttacatggacaa-gtgtcatctgac |
18397999 |
T |
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| Q |
439 |
ctttccaccaccgangagac |
458 |
Q |
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|||| ||||||||| ||||| |
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| T |
18398000 |
cttt-caccaccgaggagac |
18398018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 139 - 458
Target Start/End: Complemental strand, 11471090 - 11470774
Alignment:
| Q |
139 |
gaattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgat |
238 |
Q |
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| T |
11471090 |
gaattctgatttatctcctcctcgtaaacacagagatcagagtgttacagatgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgat |
11470991 |
T |
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| Q |
239 |
atgtcacctcctcgacggaaacatgttagtaactcgagtccagcatatttcccctcctcgccgtcgtagtcatcanacatctggatccaatgggagnnnn |
338 |
Q |
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| T |
11470990 |
atgtcacctcctcgacggaaacatgttagtaattcgagtccag-atatttcccctcctcgccgtcgtagtcatcaaacatctggatccaatgggagaaaa |
11470892 |
T |
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| Q |
339 |
nnntatgaaactcctgatttggaagatctttctccncctagangtggncgtcatgattcccnctctcaagatactttacatggacaaggtgncatctgac |
438 |
Q |
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| T |
11470891 |
aaatatgaaacttctgatttggaagatctttctccacctagacgtggtcgtcttgattccccctctcaagatactttacatggacaa-gtgtcatctgac |
11470793 |
T |
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| Q |
439 |
ctttccaccaccgangagac |
458 |
Q |
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| T |
11470792 |
cttt-caccaccgaggagac |
11470774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 11470640 - 11470496
Alignment:
| Q |
1 |
tgttaatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcaacagaaaaaggaaggatgatttgttgaggtaattgttcaattat |
100 |
Q |
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| T |
11470640 |
tgttaatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcgacagaaaaaggaaggatgatttgttgaggtaattgttcaattat |
11470541 |
T |
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| Q |
101 |
atgannnnnnnccaagcacatattcttatgtattagatgaattct |
145 |
Q |
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| T |
11470540 |
atgatttttttccaagcacatattcttatgttttagatgaattct |
11470496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 18398156 - 18398296
Alignment:
| Q |
5 |
aatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcaacagaaaaaggaaggatgatttgttgaggtaattgttcaattatatga |
104 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18398156 |
aatgaaaggaaaataggtttaatttctggtaaggatatgagagaagagatcgacagaaaaaggaaggatgatttgttgaggtaattgttcaattatatga |
18398255 |
T |
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| Q |
105 |
nnnnnnnccaagcacatattcttatgtattagatgaattct |
145 |
Q |
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| T |
18398256 |
tttttttccaagcacatattcttatgttttagatgaattct |
18398296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 31851256 - 31851136
Alignment:
| Q |
140 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
239 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
31851256 |
aattctgatttatctcctccatataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
31851158 |
T |
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| Q |
240 |
tgtcacctcctcgacggaaaca |
261 |
Q |
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| T |
31851157 |
tgtcacctcctcgacgaaaaca |
31851136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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