View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_7_52 (Length: 143)
Name: 108_7_52
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] 108_7_52 |
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[»] chr2 (6 HSPs) |
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[»] scaffold0171 (1 HSPs) |
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[»] scaffold0168 (1 HSPs) |
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[»] scaffold0020 (1 HSPs) |
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[»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 3e-71; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 41843529 - 41843387
Alignment:
Q |
1 |
cccgtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
T |
41843529 |
cccgtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgtcggcgtgtcagt |
41843430 |
T |
|
Q |
101 |
gcccgtgttcatatccgtgcttcatagaatgaaaagcaatata |
143 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41843429 |
gtccgtgttcatatccgtgcttcatagaatgaaaagcaatata |
41843387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 20242729 - 20242798
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtg |
101 |
Q |
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||||||||||||||||||| || |||||||||||||| |||||||| |||||| || ||||||||||||| |
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|
T |
20242729 |
acaccgacacatataattacactgaattatgtgattttctaaaaaaattagttgtgtcggcgtgtcagtg |
20242798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 34784976 - 34785060
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgt |
108 |
Q |
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|
||||||| ||||||||||||||||||| || ||||||||||||| |||||||| |||||| || ||| ||||||||| |||||| |
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|
T |
34784976 |
ccgacacgacaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgt |
34785060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 36096370 - 36096442
Alignment:
Q |
25 |
cgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtc |
97 |
Q |
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|
|||||| ||||||||| ||||||||| || | ||| |||||||| ||||||||||||| | || ||||||||| |
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|
T |
36096370 |
cgacacgacaccgacaaatataattacactgcattttgtgattttctaaaaaatttagctgtgtcggcgtgtc |
36096442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 5367249 - 5367210
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcct |
71 |
Q |
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|
||||||||||||||||||| || ||||||||||||||||| |
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|
T |
5367249 |
acaccgacacatataattacactgaattatgtgatttcct |
5367210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 28524488 - 28524447
Alignment:
Q |
27 |
acacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||| ||||||||||||||| || |||||||||||||| |
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|
T |
28524488 |
acacaacaacgacacatataattacactgaattatgtgattt |
28524447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 5e-17; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 1486683 - 1486747
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||||||||| |||||||||| |||||||| || |||||||||||||| |
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|
T |
1486683 |
gtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattt |
1486747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 10572586 - 10572660
Alignment:
Q |
27 |
acacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtg |
101 |
Q |
|
|
||||||||||||||||| |||||| ||||||||||||||||| || ||| ||||| || ||||||||||||| |
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|
T |
10572586 |
acacaacaccgacacatttaattacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtg |
10572660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 30749897 - 30749852
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaa |
77 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |||||||| |
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|
T |
30749897 |
acaccgacacatataattacactgaattatgtgattttctaaaaaa |
30749852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 30771348 - 30771303
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaa |
77 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |||||||| |
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|
T |
30771348 |
acaccgacacatataattacactgaattatgtgattttctaaaaaa |
30771303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 44482295 - 44482251
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
T |
44482295 |
ccgacacgacaccgacacatataattacactgaattatgtgattt |
44482251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 25934681 - 25934607
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtca |
98 |
Q |
|
|
||||||| | ||||||||||||||||| || | ||| |||||||| ||| ||||||||| | || |||||||||| |
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|
T |
25934681 |
ccgacacgataccgacacatataattacactgtattttgtgattttctagaaaatttagctgtgtcggcgtgtca |
25934607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 34315767 - 34315701
Alignment:
Q |
34 |
accgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagt |
100 |
Q |
|
|
||||||||||||||||| |||||||||||| ||| |||||||||||| | || |||| ||||||| |
|
|
T |
34315767 |
accgacacatataattacaccgaattatgtagttttttaaaaaatttagctgtgtcggcatgtcagt |
34315701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 1864880 - 1864918
Alignment:
Q |
30 |
caacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||||| || |||||||||||||| |
|
|
T |
1864880 |
caacaccgacacatataattacactgaattatgtgattt |
1864918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 10577740 - 10577813
Alignment:
Q |
35 |
ccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgt |
108 |
Q |
|
|
|||||||||||||||| || | ||| |||||||| |||||||| |||| | || ||||||||| ||| |||||| |
|
|
T |
10577740 |
ccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgt |
10577813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 13997942 - 13997904
Alignment:
Q |
30 |
caacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||||| || |||||||||||||| |
|
|
T |
13997942 |
caacaccgacacatataattacactgaattatgtgattt |
13997904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 20157323 - 20157388
Alignment:
Q |
4 |
gtgtcggacacgtgtcgc-gtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||||| |||| ||| ||||| |||||||||||||| |||| || |||||||||||||| |
|
|
T |
20157323 |
gtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatgtgattt |
20157388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 34371775 - 34371734
Alignment:
Q |
27 |
acacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||| ||||||||||||||||||| || |||||||||||||| |
|
|
T |
34371775 |
acacgacaccgacacatataattacactgaattatgtgattt |
34371734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 2784613 - 2784577
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||| |
|
|
T |
2784613 |
acaccgacacatataattatactcaattatgtgattt |
2784577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 9709877 - 9709841
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| | ||||||||||||||| |
|
|
T |
9709877 |
acaccgacacatataattacaacgaattatgtgattt |
9709841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 25361951 - 25361907
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| |||| |||||||||||||| || |||||||||||||| |
|
|
T |
25361951 |
ccgacacgacactgacacatataattacactgaattatgtgattt |
25361907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 31694704 - 31694748
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| |||||||||| | ||||||||| |||||||||||||| |
|
|
T |
31694704 |
ccgacacgacaccgacacttgtaattatactgaattatgtgattt |
31694748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 1815314 - 1815240
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgt |
106 |
Q |
|
|
|||||||||| | |||||| || |||||||||||||| ||||| | ||| || || ||||||||||||| |||| |
|
|
T |
1815314 |
acaccgacacttgtaattacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtccgt |
1815240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 5944347 - 5944304
Alignment:
Q |
25 |
cgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||| |||||||||| |||||||| || |||||||||||||| |
|
|
T |
5944347 |
cgacacgacaccgacacttataattacactgaattatgtgattt |
5944304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 13436515 - 13436476
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcct |
71 |
Q |
|
|
||||| ||||||||||||| || ||||||||||||||||| |
|
|
T |
13436515 |
acaccaacacatataattacactgaattatgtgatttcct |
13436476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 2e-16; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 6401561 - 6401479
Alignment:
Q |
26 |
gacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgt |
108 |
Q |
|
|
||||| ||||||||||||||||||| || | ||| |||||||| ||||||||||||||| || ||||||||| ||| |||||| |
|
|
T |
6401561 |
gacacgacaccgacacatataattacactgtattttgtgattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgt |
6401479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 39758332 - 39758279
Alignment:
Q |
29 |
acaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttag |
82 |
Q |
|
|
|||| ||||||||||||||||| || |||||||||||||| ||||||||||||| |
|
|
T |
39758332 |
acaataccgacacatataattacactgaattatgtgattttctaaaaaatttag |
39758279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 23015964 - 23016027
Alignment:
Q |
5 |
tgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||| ||||| |||||| |||||| |||||| |||||||| || |||||||||||||| |
|
|
T |
23015964 |
tgtcggacacatgtcgtgtccgatacaacatcgacacctataattacactgaattatgtgattt |
23016027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 21814326 - 21814253
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtc |
97 |
Q |
|
|
||||||| ||||||||||||||||||| || | ||| |||||||| |||||||| |||| | || ||||||||| |
|
|
T |
21814326 |
ccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc |
21814253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 30099040 - 30099105
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtc |
97 |
Q |
|
|
||||||||||||||||||| || |||||||| |||| |||||||||||||| || ||||||||| |
|
|
T |
30099040 |
acaccgacacatataattacacagaattatgcgattgtttaaaaaatttagttgtgtcggcgtgtc |
30099105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 14873602 - 14873542
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtg |
64 |
Q |
|
|
|||| |||||||||| |||||||||| ||||||||||||||||||| || ||||||||| |
|
|
T |
14873602 |
gtgttggacacgtgttgcgtccgacatgacaccgacacatataattacactaaattatgtg |
14873542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 31084408 - 31084344
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||||||||| ||| |||||| | |||||| | |||||||||||||| |
|
|
T |
31084408 |
gtgtcggacacgtgtcgtgtccgacacgacatcgacacttgtaattacattgaattatgtgattt |
31084344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 39205965 - 39205901
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| ||||||||| ||| ||||| ||||| ||||||||||||| ||| |||||| |||||| |
|
|
T |
39205965 |
gtgtcgggcacgtgtcgtgtcggacacgacaccaacacatataattacacctaattatatgattt |
39205901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 32426871 - 32426921
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttag |
82 |
Q |
|
|
||||||||||| ||||||| | |||||||||||||| ||||||||||||| |
|
|
T |
32426871 |
acaccgacacaaataattacaatgaattatgtgattttctaaaaaatttag |
32426921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 22423806 - 22423850
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| ||||||||| ||||||||||| |||||||||||||| |
|
|
T |
22423806 |
ccgacacgacaccgacatatataattatattgaattatgtgattt |
22423850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 22)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 9778585 - 9778521
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||| | ||||||||| |||||||||| | ||||||||| |||||||||||||| |
|
|
T |
9778585 |
gtgtcggacacgtgttgtgtccgacacgacaccgacacttgtaattatactgaattatgtgattt |
9778521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 1433539 - 1433475
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||| |||| ||||||||| ||||||||||||||||||| ||| ||| ||||||||| |
|
|
T |
1433539 |
gtgtcggacacatgtcttgtccgacacgacaccgacacatataattacaccaaatgatgtgattt |
1433475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 5409810 - 5409874
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||||||||| |||||||||| | ||||| || |||||||||||||| |
|
|
T |
5409810 |
gtgtcggacacgtgtcgtgtccgacacgacaccgacacttgtaattgcactgaattatgtgattt |
5409874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 32093994 - 32094058
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||||||||| ||||||||| | |||||| || |||||||||||||| |
|
|
T |
32093994 |
gtgtcggacacgtgtcgtgtccgacacgacaccgacatttgtaattacactgaattatgtgattt |
32094058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 18213035 - 18213112
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcct-aaaaaatttagttttgncggcgtgtcagtgcccgtgt |
108 |
Q |
|
|
||||||||||||||||||| || ||||||||||||| || |||||| |||||| || |||||| |||||| |||||| |
|
|
T |
18213035 |
acaccgacacatataattacactaaattatgtgattttctaaaaaaaattagttgtgtcggcgtatcagtgtccgtgt |
18213112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 39138501 - 39138451
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttag |
82 |
Q |
|
|
||||||||| ||||||||| || |||||||||||||| ||||||||||||| |
|
|
T |
39138501 |
acaccgacatatataattacactgaattatgtgattttctaaaaaatttag |
39138451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 15902887 - 15902843
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||||||||||| || ||||||||||||| |
|
|
T |
15902887 |
ccgacacaacaccgacacatataattacactaaattatgtgattt |
15902843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20545220 - 20545267
Alignment:
Q |
1 |
cccgtgtcggacacgtgtcgcgtccgacacaacaccgacacatataat |
48 |
Q |
|
|
||||||||||||| |||||| || |||||| ||||||||||||||||| |
|
|
T |
20545220 |
cccgtgtcggacatgtgtcgtgtacgacacgacaccgacacatataat |
20545267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 22602705 - 22602748
Alignment:
Q |
25 |
cgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||| ||||||||||||||||||| || |||||||||||||| |
|
|
T |
22602705 |
cgacacgacaccgacacatataattacactgaattatgtgattt |
22602748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 24146873 - 24146830
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaa |
75 |
Q |
|
|
||||||||||||||||||||| |||||||||||||| |||||| |
|
|
T |
24146873 |
acaccgacacatataattatattgaattatgtgattttctaaaa |
24146830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 21138970 - 21139016
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataatta |
50 |
Q |
|
|
||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
T |
21138970 |
gtgtcggacacgtatcatgtccgacacgacaccgacacatataatta |
21139016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 7758389 - 7758336
Alignment:
Q |
22 |
gtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaa |
75 |
Q |
|
|
||||||||| ||||||||||| |||||||||| ||||||| | |||| |||||| |
|
|
T |
7758389 |
gtccgacacgacaccgacacacataattatactgaattatataattttctaaaa |
7758336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 640170 - 640134
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
640170 |
acaccgacacatataattacactgaattatgtgattt |
640134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 3721150 - 3721114
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||| |
|
|
T |
3721150 |
acaccgacacatataattatactaaattatgtgattt |
3721114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 13770776 - 13770712
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||| | ||||||||| ||| |||||| | |||||| || ||||||||| |||| |
|
|
T |
13770776 |
gtgtcggacacgtgttgtgtccgacacgacaacgacacttgtaattacactgaattatgtaattt |
13770712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 17851489 - 17851445
Alignment:
Q |
31 |
aacaccgacacatataattataccgaattatgtgatttcctaaaa |
75 |
Q |
|
|
||||| |||||||||||||| || |||||||||||||| |||||| |
|
|
T |
17851489 |
aacacagacacatataattacactgaattatgtgattttctaaaa |
17851445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 19206107 - 19206071
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||||| |||||||||||||| |
|
|
T |
19206107 |
acaccgacacatataattataatgaattatgtgattt |
19206071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 23849460 - 23849492
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtg |
64 |
Q |
|
|
|||||||||||||||||||||| |||||||||| |
|
|
T |
23849460 |
acaccgacacatataattatactgaattatgtg |
23849492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 32308185 - 32308082
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgttcatatccgtgcttc |
123 |
Q |
|
|
||||||| |||| |||||||| ||||| || |||||||||||||| || ||| |||| || ||||||||||||| || ||||| ||| ||||||| |
|
|
T |
32308185 |
ccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccatgttcgtatttgtgcttc |
32308086 |
T |
|
Q |
124 |
atag |
127 |
Q |
|
|
|||| |
|
|
T |
32308085 |
atag |
32308082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 43027443 - 43027507
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||| ||||| |||||||||| | || ||| || | |||||||||||| |
|
|
T |
43027443 |
gtgtcggacacgtgtcgtgtctgacacgacaccgacacttgtatttacactgcattatgtgattt |
43027507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 22484082 - 22484039
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaa |
75 |
Q |
|
|
|||||||||||||||||||||| |||||||| |||| |||||| |
|
|
T |
22484082 |
acaccgacacatataattatactgaattatgcaattttctaaaa |
22484039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 29769511 - 29769480
Alignment:
Q |
31 |
aacaccgacacatataattataccgaattatg |
62 |
Q |
|
|
||||||||||||||||||||||| |||||||| |
|
|
T |
29769511 |
aacaccgacacatataattatacagaattatg |
29769480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 28152178 - 28152062
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcc |
103 |
Q |
|
|
||||||||||||||||| ||||||||| |||||| | |||||| || |||||||||||||| ||| ||| || |||| ||||||||||||| | |
|
|
T |
28152178 |
gtgtcggacacgtgtcgtgtccgacac-----cgacacttgtaattacactgaattatgtgatttttcaaattatt-agctttgtcggcgtgtcagtgtc |
28152085 |
T |
|
Q |
104 |
cgtgttcatatccgtgcttcata |
126 |
Q |
|
|
||||| ||||||||||||||||| |
|
|
T |
28152084 |
cgtgtccatatccgtgcttcata |
28152062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 17327629 - 17327719
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgt |
94 |
Q |
|
|
||||| ||||||||||| ||||||||| |||| |||||||||| ||| || ||||||||||||| || |||| |||||| || |||||| |
|
|
T |
17327629 |
gtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacactaaattatgtgattttctcaaaatcttagttgtgtcggcgt |
17327719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 5626698 - 5626767
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtg |
101 |
Q |
|
|
||||||||||||||| ||| || ||| || ||||||| |||||||| |||||| || ||||||||||||| |
|
|
T |
5626698 |
acaccgacacatatatttacactgaactaagtgattttctaaaaaaattagttgtgtcggcgtgtcagtg |
5626767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 16488584 - 16488657
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtc |
97 |
Q |
|
|
||||||| ||||||||||||||||||| || | ||| |||||||| |||||||| |||| | || ||||||||| |
|
|
T |
16488584 |
ccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc |
16488657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 18367901 - 18367828
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtc |
97 |
Q |
|
|
||||||| ||||||||||||||||||| || | ||| |||||||| |||||||| |||| | || ||||||||| |
|
|
T |
18367901 |
ccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc |
18367828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 9025490 - 9025532
Alignment:
Q |
26 |
gacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||| ||||||||||||||||||| || |||||||||||||| |
|
|
T |
9025490 |
gacacgacaccgacacatataattacactgaattatgtgattt |
9025532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 8931596 - 8931668
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgt |
96 |
Q |
|
|
||||||| ||| |||||||||||||||||| ||||||||| |||| || ||| ||||| | || |||||||| |
|
|
T |
8931596 |
ccgacacgacatcgacacatataattatactgaattatgttattttctcaaatttttagctgtgtcggcgtgt |
8931668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 9027241 - 9027200
Alignment:
Q |
26 |
gacacaacaccgacacatataattataccgaattatgtgatt |
67 |
Q |
|
|
||||| ||||||||||||||||||| || ||||||||||||| |
|
|
T |
9027241 |
gacacgacaccgacacatataattacacggaattatgtgatt |
9027200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 12696409 - 12696305
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcc |
103 |
Q |
|
|
||||| ||||||||||| ||||||||| |||| ||||| | |||||| || ||||||||| |||| | ||| |||| | || ||||||||||||| | |
|
|
T |
12696409 |
gtgtcagacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtc |
12696310 |
T |
|
Q |
104 |
cgtgt |
108 |
Q |
|
|
||||| |
|
|
T |
12696309 |
cgtgt |
12696305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 7027299 - 7027263
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
7027299 |
acaccgacacatataattacactgaattatgtgattt |
7027263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 7265595 - 7265631
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
7265595 |
acaccgacacatataattacactgaattatgtgattt |
7265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 9522956 - 9522912
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||||||||||| | |||||| || |||||||||||||| |
|
|
T |
9522956 |
ccgacacaacaccgacacttgtaattacactgaattatgtgattt |
9522912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 11424705 - 11424749
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
T |
11424705 |
ccgacacaacaccaacacatataattatattgaattatatgattt |
11424749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 26562754 - 26562710
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| ||| ||||||||||||||| || |||||||||||||| |
|
|
T |
26562754 |
ccgacacgacatcgacacatataattacactgaattatgtgattt |
26562710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000005; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 44132641 - 44132691
Alignment:
Q |
27 |
acacaacaccgacacatataattataccgaattatgtgatttcctaaaaaa |
77 |
Q |
|
|
|||| |||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
T |
44132641 |
acacgacaccgacacatataattatactgaattacgtgattttctaaaaaa |
44132691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 15659749 - 15659798
Alignment:
Q |
19 |
cgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |
|
|
T |
15659749 |
cgcgtccgacacgacaccaacacatataattacaccgaattatgagattt |
15659798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 3947740 - 3947804
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||||||||| |||| ||||| | |||||| || |||||||| ||||| |
|
|
T |
3947740 |
gtgtcggacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgcgattt |
3947804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 5414168 - 5414250
Alignment:
Q |
26 |
gacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgt |
108 |
Q |
|
|
||||| ||||||| ||||||||||| || | ||| |||||||| |||||||| |||| | || ||||||||| ||| |||||| |
|
|
T |
5414168 |
gacacgacaccgatacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgt |
5414250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 19097896 - 19097941
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaa |
77 |
Q |
|
|
||||||||| |||||||||||| |||||| ||||||| |||||||| |
|
|
T |
19097896 |
acaccgacaaatataattatactgaattacgtgattttctaaaaaa |
19097941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 9996897 - 9996861
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| |||||||||||||| |||||||||||||| |
|
|
T |
9996897 |
acaccgagacatataattatactgaattatgtgattt |
9996861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 18576039 - 18576075
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||| ||||||||||||| ||||||||||||||||| |
|
|
T |
18576039 |
acaccaacacatataattacaccgaattatgtgattt |
18576075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 22234884 - 22234928
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| ||||||||||||| ||||| || |||||||||||||| |
|
|
T |
22234884 |
ccgacacgacaccgacacatagaattacactgaattatgtgattt |
22234928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 23292965 - 23293024
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||||||||| |
|
|
T |
23292965 |
gtgtcggacacgtgtcgtgtccgacac-----cgacacttgtaattatactgaattatgtgattt |
23293024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 35222995 - 35222930
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtc |
97 |
Q |
|
|
||||||||||||||||||| | |||||||||||||| ||||||| |||||| || ||||||||| |
|
|
T |
35222995 |
acaccgacacatataattacattgaattatgtgattttctaaaaatgttagttgtgtcggcgtgtc |
35222930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 27505331 - 27505267
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||| ||| ||||| |||||||||| | |||||| || ||||||||||||| |
|
|
T |
27505331 |
gtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacacttaattatgtgattt |
27505267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 13845527 - 13845576
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaattta |
81 |
Q |
|
|
||||||||||||||||||| || | ||| |||||||| |||||||||||| |
|
|
T |
13845527 |
acaccgacacatataattacactgcattttgtgattttctaaaaaattta |
13845576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 29508530 - 29508465
Alignment:
Q |
4 |
gtgtcggacacgtgtcgcgtccgacac-aacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||| |||||| ||||||||| |||| ||||||||||||||| || ||||||| |||||| |
|
|
T |
29508530 |
gtgtcggacgtgtgtcgtgtccgacaccaacatcgacacatataattacactgaattatatgattt |
29508465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 7614417 - 7614453
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||| |||||||||||| |||||||||||||| |
|
|
T |
7614417 |
acaccgacatatataattatactgaattatgtgattt |
7614453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 7928507 - 7928471
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
7928507 |
acaccgacacatataattacactgaattatgtgattt |
7928471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 8789552 - 8789588
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
8789552 |
acaccgacacatataattacacggaattatgtgattt |
8789588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 18427006 - 18426970
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||| ||||||||| ||||||||||||||||| |
|
|
T |
18427006 |
acaccgacatatataattacaccgaattatgtgattt |
18426970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 40993337 - 40993373
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
40993337 |
acaccgacacatataattacactgaattatgtgattt |
40993373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 23494 - 23441
Alignment:
Q |
15 |
gtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||| ||||||||| |||||||||| |||||||| || |||||||||||||| |
|
|
T |
23494 |
gtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattt |
23441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 21108 - 21064
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| | ||||||||||||||||||||||| ||||||||||| |
|
|
T |
21108 |
ccgacacgataccgacacatataattataccgacttatgtgattt |
21064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.0000000007; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 14134756 - 14134661
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgttcatatccgtgcttcatag |
127 |
Q |
|
|
||||||||| ||||||||| || |||||||||||||| || ||| ||||| ||| || |||||| ||| | |||| | |||||||||||||||| |
|
|
T |
14134756 |
acaccgacatatataattacactgaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtcggtgtccgtatccgtgcttcatag |
14134661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 18964234 - 18964182
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgatttcctaaaaaatttagtt |
84 |
Q |
|
|
||||||||||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
T |
18964234 |
acaccgacacatataattacattgaattatgtgattttctaaaaaaattagtt |
18964182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 21520763 - 21520806
Alignment:
Q |
25 |
cgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||| ||||||||||||||||||||| |||||||| |||||| |
|
|
T |
21520763 |
cgacacgacaccgacacatataattatatcgaattatatgattt |
21520806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 11803321 - 11803280
Alignment:
Q |
27 |
acacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||||||||| ||||||||||||| || |||||||||||||| |
|
|
T |
11803321 |
acacaacaccaacacatataattacactgaattatgtgattt |
11803280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 11927083 - 11927124
Alignment:
Q |
27 |
acacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
|||| ||||||||||||||||||| || |||||||||||||| |
|
|
T |
11927083 |
acacgacaccgacacatataattacactgaattatgtgattt |
11927124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 36450803 - 36450851
Alignment:
Q |
79 |
ttagttttgncggcgtgtcagtgcccgtgttcatatccgtgcttcatag |
127 |
Q |
|
|
|||||| || ||||||||||||| |||||| | |||||||||||||||| |
|
|
T |
36450803 |
ttagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag |
36450851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 4786340 - 4786376
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
4786340 |
acaccgacacatataattacactgaattatgtgattt |
4786376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8847313 - 8847277
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
8847313 |
acaccgacacatataattacactgaattatgtgattt |
8847277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 26902177 - 26902213
Alignment:
Q |
32 |
acaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||||||||||||||| || |||||||||||||| |
|
|
T |
26902177 |
acaccgacacatataattacactgaattatgtgattt |
26902213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 34451032 - 34451115
Alignment:
Q |
25 |
cgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgncggcgtgtcagtgcccgtgt |
108 |
Q |
|
|
|||||| ||||||||||||||||||| || | ||| |||||||| | |||||| |||| | || | | ||||| |||||||||| |
|
|
T |
34451032 |
cgacacgacaccgacacatataattacactgcattttgtgattttcaaaaaaaattagctgtgtcagtgtgtcggtgcccgtgt |
34451115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 31109577 - 31109616
Alignment:
Q |
89 |
cggcgtgtcagtgcccgtgttcatatccgtgcttcataga |
128 |
Q |
|
|
||||||||||||| |||||| |||||| |||||||||||| |
|
|
T |
31109577 |
cggcgtgtcagtgtccgtgtccatatcagtgcttcataga |
31109616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 135308 - 135350
Alignment:
Q |
26 |
gacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||| ||||||||||||||||||| || |||||||||||||| |
|
|
T |
135308 |
gacacgacaccgacacatataattacacagaattatgtgattt |
135350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 44519 - 44563
Alignment:
Q |
24 |
ccgacacaacaccgacacatataattataccgaattatgtgattt |
68 |
Q |
|
|
||||||| | ||||||||||||||||| || |||||||||||||| |
|
|
T |
44519 |
ccgacacgataccgacacatataattacactgaattatgtgattt |
44563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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