View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_7_64 (Length: 250)
Name: 108_7_64
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_7_64 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32898313 - 32898535
Alignment:
| Q |
1 |
agatatatgtattacgttacgtacctaatttt-tgtttgaaaatgaaagatagaataaaaattaatacatggtcaaagttaggaaaaatagtatcgaatt |
99 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32898313 |
agatatatgtattatgttacgtacctaattttttgtttgaaaatgaaagatagaataaaaattaatacatggtcaaagttaggaaaaatagtctcgaatt |
32898412 |
T |
|
| Q |
100 |
gccttagatggnttgaagctgacaatagtccataataagtagtttctagaattttcaaaagaataaaagtacntgtttcctttatttcaaaatacttgtt |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32898413 |
gccttagatggtttgaagctgacaatagtccataataagtagtttctagaattttcaaaagaataaaagtacatgtttcctttatttcaaaatacttgtt |
32898512 |
T |
|
| Q |
200 |
acaattttataatatatagtgtt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
32898513 |
acaattttataatatatagtgtt |
32898535 |
T |
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