View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_7_96 (Length: 202)
Name: 108_7_96
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_7_96 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29193227 - 29193432
Alignment:
| Q |
1 |
tttgtctccatcattaaactaaaatgaatgtttaagtgttacgttatgcatgaatgaacgtggcaaaagcagtgaaag---------aaataagataagg |
91 |
Q |
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| T |
29193227 |
tttgtctccgtcattaaactaaaatgaatgtttaagtgttacgttatgcatgaatgaacgtggcaaaagcagtgaaagaaataactcaaataagataagg |
29193326 |
T |
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| Q |
92 |
annnnnnnggcgataagacaaagtgcaacactgagaaatgaagagaaactaaccaatctcatcaaaccaaaccaatcaatggcgccaatttcggtacctc |
191 |
Q |
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| T |
29193327 |
atttttttggcgataagacaaagtgcaacactgacaaatgaagagaaactaaccaatctcat-----caaaccaatcaatggcgccaacttcattacctc |
29193421 |
T |
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| Q |
192 |
tcaatttgaat |
202 |
Q |
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||||||||||| |
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| T |
29193422 |
tcaatttgaat |
29193432 |
T |
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