View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_8_15 (Length: 355)
Name: 108_8_15
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_8_15 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 74 - 355
Target Start/End: Original strand, 3485232 - 3485514
Alignment:
| Q |
74 |
attaattttgtttcaaaaaatttaaaattctttagacaaaattaggtttactataaa-tgtttaaacatctcaaaatcaataacacatatctaaaatcaa |
172 |
Q |
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| T |
3485232 |
attaattttgtttcaaaaaatttaaaattctttagacaaaattaggtttactataaaatgtttaaacatctcaaaatcaataacacatatctaaaatcaa |
3485331 |
T |
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| Q |
173 |
tttcaattcttcaaaaagttgaacaaaacaaacaataacaacgtgtcaatgggtatctagtgttcaatttgtagcagcaacctttagaaaccacaacatt |
272 |
Q |
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| T |
3485332 |
tttcaattcttcaaaaagttgaacaaaacaaacaataacaacgtgtcaatgggtatctagtgttcaatttgtatcagcaacctttagaaaccacaacatt |
3485431 |
T |
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| Q |
273 |
gaggtcgaaaatcacttaagacaacccagcacaagcacaagtattctcaaataattgaaaaacaacaaaacccttatctttgt |
355 |
Q |
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| T |
3485432 |
gaggtcgaaaatcacttaagacaacccaacacaagcacaagtattctcaaataattgaaaaacaacaaaacccttatctttgt |
3485514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3485510 - 3485592
Alignment:
| Q |
1 |
tttgtgggaccttaatttgatttgaaatttccgtacaaaactaacaacttaagagttgtacctctccttcttgattaattttg |
83 |
Q |
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| T |
3485510 |
tttgtgggaccttaatttgatttgaaacttccgtacaaaactaacaacttaagagttgcacctctccttcttaattaattttg |
3485592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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