View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_8_53 (Length: 826)
Name: 108_8_53
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_8_53 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 39811696 - 39811196
Alignment:
| Q |
1 |
aatgttattagtttcacnntaataacagtactaactaaggtgtaataagagcaaatataagtaatgcctccaaactttgtactattagtatttcagnnnn |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39811696 |
aatgttattagtttcaagttaataacagtactaactaaggtgtaataagagcaaatataagtaatgcctccaaactttgtactattagtatttcagtttt |
39811597 |
T |
|
| Q |
101 |
nnnaatatatttggttattgcgtgacatagtaattctttggttatcggctacaacgagctaatgaccaggatgacccctaagaaatattgatctacactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39811596 |
tttaatatatttggttattgcgtgacatagtaattctttggttatcggctacaacgagctaatgaccaggatgacccctaagaaatattgatctacactc |
39811497 |
T |
|
| Q |
201 |
aaaaccttgaggcatatatgatcacattcttatatatccttcctttaagagatgtatgactaaacgaatattatcactgtataagttactcacttctaac |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39811496 |
aaaaccttgaggcatatataatcacattcttatatatccttcctttaagagatgtatgactaaacgaatattatcactgtataagttactcacttctaac |
39811397 |
T |
|
| Q |
301 |
caaatcgaaggtaaagcttttggtgaagaagatccatcagcaccaccagtaagctgtgagagatccccatcgacttcagggccatcttcttgtatcacca |
400 |
Q |
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| T |
39811396 |
caaattgaaggtaaagcttttggtgaagaagatccatcagcaccaccagtaagctgtgagagatccccatcaacttcagggccatcttcttgtatcacca |
39811297 |
T |
|
| Q |
401 |
cattgctaaagtccataccaggagggataacctgcagaaattccatttaagacatggntattgtttacataaaaccatcnaagagataa-tgatatatgc |
499 |
Q |
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| T |
39811296 |
cattgctaaagtccataccaggagggataacctgcagaaattccatttaagacatgg-tattgttcacataaaaccatcaaagagataactgatatatgc |
39811198 |
T |
|
| Q |
500 |
ta |
501 |
Q |
| |
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|| |
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| T |
39811197 |
ta |
39811196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 655 - 826
Target Start/End: Complemental strand, 39811863 - 39811692
Alignment:
| Q |
655 |
caattgaattatgttaagttgttacttncaagattagctagttttcttaaggaacgattttctccaaaagcttttaatagagttgttatgttcttctttg |
754 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39811863 |
caattgaattatgttaagttgttacttacaagattagctagttttcttaaggaacgattttctccaaaagcctttaatagagttgttatgttcttctttg |
39811764 |
T |
|
| Q |
755 |
gatctggccttgataaggctaatatcataggcttgtgaggatttgtgaagaaacgcatcacctgcataatgt |
826 |
Q |
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| T |
39811763 |
gatctggccttgataaggctaatatcataggcttgtgaggatttgtgaagaaacgcatcacctgcataatgt |
39811692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 570 - 649
Target Start/End: Complemental strand, 39811079 - 39811000
Alignment:
| Q |
570 |
taatctcaaatactaaatgatcttcaacttcagtangctaaaaacgncattctnnccgccattctaggcatgtancgacc |
649 |
Q |
| |
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| T |
39811079 |
taatctcaaatactaaatgatcttcaacttcagtatgctaaaaactgcattcttaccgccattctgggcatgtaacgacc |
39811000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 678 - 823
Target Start/End: Complemental strand, 15799255 - 15799110
Alignment:
| Q |
678 |
acttncaagattagctagttttcttaaggaacgattttctccaaaagcttttaatagagttgttatgttcttctttggatctggccttgataaggctaat |
777 |
Q |
| |
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|||| |||| || || |||| |||||||| |||| |||| ||||| ||||||| || || |||| |||||||||||||||||||||||||||||| || |
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| T |
15799255 |
acttacaaggtttgcaagttctcttaagggacgactttcgccaaatgcttttagaagcgtggttaagttcttctttggatctggccttgataaggccaag |
15799156 |
T |
|
| Q |
778 |
atcataggcttgtgaggatttgtgaagaaacgcatcacctgcataa |
823 |
Q |
| |
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|||| ||| |||||||||||||| |||||||||||||||||||||| |
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| T |
15799155 |
atcacaggtttgtgaggatttgtaaagaaacgcatcacctgcataa |
15799110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 284 - 434
Target Start/End: Complemental strand, 15798893 - 15798743
Alignment:
| Q |
284 |
agttactcacttctaaccaaatcgaaggtaaagcttttggtgaagaagatccatcagcaccaccagtaagctgtgagagatccccatcgacttcagggcc |
383 |
Q |
| |
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||||||| |||||| ||||||| | ||| | |||||||||||||| | | || |||||||||||||||| | || || ||||| || ||||| | |
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| T |
15798893 |
agttacttacttctgaccaaattggaggcactgcttttggtgaagacccttcgacaccaccaccagtaagctgagcaagctctccatcaacatcaggaca |
15798794 |
T |
|
| Q |
384 |
atcttcttgtatcaccacattgctaaagtccataccaggagggataacctg |
434 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
15798793 |
atcttcttgtatcacaacattgctaaagtccataccaggtgggataacctg |
15798743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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