View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_8_56 (Length: 423)
Name: 108_8_56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_8_56 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 199 - 423
Target Start/End: Original strand, 3485291 - 3485514
Alignment:
| Q |
199 |
gtttaaacatctcaaaatcaataacacatatctaaaatcaatttcaattcttcaaaaagttgaacaaaacaaacaataacaacgtgtcaatgggtatcta |
298 |
Q |
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| T |
3485291 |
gtttaaacatctcaaaatcaataacacatatctaaaatcaatttcaattcttcaaaaagttgaacaaaacaaacaataacaacgtgtcaatgggtatcta |
3485390 |
T |
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| Q |
299 |
gtgttcaatttgtagcagcaacctttagaaaccacaacattgaggtcgaaaatcacttaagacaacccagcacaagcacaagtattctcaaatnattgaa |
398 |
Q |
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| T |
3485391 |
gtgttcaatttgtatcagcaacctttagaaaccacaacattgaggtcgaaaatcacttaagacaacccaacacaagcacaagtattctcaaataattgaa |
3485490 |
T |
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| Q |
399 |
aaacaacaaaaccccttatctttgt |
423 |
Q |
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| T |
3485491 |
aaacaacaaaa-cccttatctttgt |
3485514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 3485510 - 3485612
Alignment:
| Q |
1 |
tttgtgggaccttaatttgatttgaaatttccgtacaaaactaacaacttaagagttgtacctctccttcttgattaattttgaagtgaaagtgaagcaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3485510 |
tttgtgggaccttaatttgatttgaaacttccgtacaaaactaacaacttaagagttgcacctctccttcttaattaattttgaagtgaaagtgaagcaa |
3485609 |
T |
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| Q |
101 |
ttg |
103 |
Q |
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| T |
3485610 |
ttg |
3485612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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