View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_8_74 (Length: 627)
Name: 108_8_74
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_8_74 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 128 - 627
Target Start/End: Original strand, 29305019 - 29305517
Alignment:
| Q |
128 |
aattctaccttaagaagatcgacggtttggcttcgtctctgaagattaggttggagtttgaggattttgatgagtttgaatgagaatgcgttaggataat |
227 |
Q |
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| T |
29305019 |
aattctaccttaagaagatcgacggtttggcttcgtctctgaagattaggttgaagtttgaggattttgatgagtttgaatgagaatgcgttaggataat |
29305118 |
T |
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| Q |
228 |
gaagtgtgaaagatttgaaaatcgtgaataaagattgattcctggtttgagagtattcatcgattgcttcttgcaacgacgagaggtcgttggataggag |
327 |
Q |
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| T |
29305119 |
gaagtgtgaaagatttgaaaatcgtgaataaagattgattcctggtttgagagtattcatcgattgcttcttgcaacgacgagaggtcgttggataggag |
29305218 |
T |
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| Q |
328 |
aaacctttcggcgtgttgtcgaagttcgaagccgtggatgagtgatctgtcttggttttcttcgatggacccttctcttgttgattctttcgtgcaagcc |
427 |
Q |
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| T |
29305219 |
aaacctttcggcgtgttgtcgaagttcgaagccgtggatgagtgatctgtcttggttttcttcgatgga-ccttctcttgttgattctttcgtgcaagcg |
29305317 |
T |
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| Q |
428 |
attgcgcggtggcgtgttgatatctggatcaaacggattgcgtaaggaagcttcttgcggtggtgatgaagattcagtggttgacgccattgttgaggan |
527 |
Q |
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| T |
29305318 |
attgcgcggaggcgtgttgatatctggatcaaacggattgcgtaaggaagcttcttgcggtggtgatgaagattcagtggttgacgccattgttgaggaa |
29305417 |
T |
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| Q |
528 |
ggttgaaacttcgaatgtgggttttggagggaagagttttgtaacggttagtttggtggaatcggttattctgttgtggaaattatccacgtcagctttt |
627 |
Q |
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| T |
29305418 |
ggttgaaacttcgaatgtgggttttggagggaagagttttgtaacggttagtttggtggaatcggttattctgttgtggaaattatccacgtcagctttt |
29305517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 29305513 - 29305643
Alignment:
| Q |
1 |
cttttgtattgaatgaatgggacgggcttgaagcccgttgtttgggttcaatgtgatggacgggcctgaagcccgttactcgataattctctgaagcttt |
100 |
Q |
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| T |
29305513 |
cttttgtattgaatgaatgggacgggcttgaagcccgttgtttgggttcaatgtgatggacgggcctgaagcccgttagtcgataattctctgaagcttt |
29305612 |
T |
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| Q |
101 |
tggaatccggtggcggagattctcttcaatt |
131 |
Q |
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| T |
29305613 |
tggaatccggtggcggagattctcttcaatt |
29305643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 270 - 471
Target Start/End: Original strand, 29322350 - 29322550
Alignment:
| Q |
270 |
tggtttgagagtattcatcgattgcttcttgcaacgacgagaggtcgttggataggagaaacctttcggcgtgttgtcgaagttcgaagccgtggatgag |
369 |
Q |
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| T |
29322350 |
tggtttgagtgtattcttcgattgcttgttgcagcgatgcgaggtcgttggatccgagcaatcttgttgcgtgttcttgaagttggaggccgtggatgag |
29322449 |
T |
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| Q |
370 |
tgatctgtcttggttttcttcgatggacccttctcttgttgattctttcgtgcaagccattgcgcggtggcgtgttgatatctggatcaaacggattgcg |
469 |
Q |
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| T |
29322450 |
tgatttatcttggttgtgttcgatgcgcc-ttctcttgttcattatttcttccaagtgattgcgcagtggtgggtttatatccggatcaaacggattgcg |
29322548 |
T |
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| Q |
470 |
ta |
471 |
Q |
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| T |
29322549 |
ta |
29322550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 394
Target Start/End: Original strand, 29333482 - 29333665
Alignment:
| Q |
211 |
gaatgcgttaggataatgaagtgtgaaagatttgaaaatcgtgaataaagattgattcctggtttgagagtattcatcgattgcttcttgcaacgacgag |
310 |
Q |
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| T |
29333482 |
gaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcgatgaa |
29333581 |
T |
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| Q |
311 |
aggtcgttggataggagaaacctttcggcgtgttgtcgaagttcgaagccgtggatgagtgatctgtcttggttttcttcgatg |
394 |
Q |
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| T |
29333582 |
agatcgttggattgaagaatcgttgcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatg |
29333665 |
T |
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