View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_9_10 (Length: 308)
Name: 108_9_10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_9_10 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7168014 - 7168140
Alignment:
| Q |
1 |
ttatgctcatggtaccactagtgataagcaattacgatcagttaaggaagttgtaaatcacttacttccggaaggctgcaccatgttagattcaaaggnn |
100 |
Q |
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| T |
7168014 |
ttatgctcatgataccactagtggtaagcaattacgatcagttaaggaagttgtaaatcacttacttccggaaggctacaccatgttagattcaaaggaa |
7168113 |
T |
|
| Q |
101 |
nnnnngggaaaggtgaagcattaaaac |
127 |
Q |
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| T |
7168114 |
aaaaaaggaaaggtgaagcattaaaac |
7168140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 7167945 - 7168018
Alignment:
| Q |
227 |
aattaatatatatttgttaatgataataagactcatttatcttcattttttgttatatttcttgtagtattatg |
300 |
Q |
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| T |
7167945 |
aattaatatatatttgttaatgataataagactcatttatcttcattttttgttatatttcttgtagtattatg |
7168018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 7178008 - 7178100
Alignment:
| Q |
6 |
ctcatggtaccactagtgataagcaattacgatcagttaaggaagttgtaaatcacttacttccggaaggctgcaccatgttagattcaaagg |
98 |
Q |
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| T |
7178008 |
ctcatggtaccactactggtaagaaattacgatcagtgacagaagttgtaaatcacttacttccagaaggctacaccaagatagaatcaaagg |
7178100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 7177932 - 7177976
Alignment:
| Q |
233 |
tatatatttgttaatgataataagactcatttatcttcatttttt |
277 |
Q |
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|
| T |
7177932 |
tatatatttgtcaatgttaacaacactcatttatcttcatttttt |
7177976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 6768194 - 6768154
Alignment:
| Q |
25 |
taagcaattacgatcagttaaggaagttgtaaatcacttac |
65 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
6768194 |
taagaaattacgatcagttaaggaagttgtaaatcacttac |
6768154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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