View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 108_9_19 (Length: 475)
Name: 108_9_19
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_9_19 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 53159235 - 53159556
Alignment:
| Q |
1 |
tctaatcaacccaataataaaaacccaataattaaaatgcttcatatatatagtagaacacactcttctcaaaattgtgttagcaacgtgacaaaaaatg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
53159235 |
tctaatcaacccaataaaaaaaacccaataattaaaatgcttcatatatatagtagaacacactcttttcaaaattgtgttagcagcgtgacaaaaaatg |
53159334 |
T |
|
| Q |
101 |
gagcaactacttagccgtaaaatacaatatcaaagacataaataaaggcagcaaattaaggaaggaacatagaatgcattaagtctttcactccatagaa |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
53159335 |
gagcaactacttagccgtaaattacaatatcaaagacaaaaataaaggcagcaaattaaggaaggaacaaagaatgcattaagtctttcactccatagaa |
53159434 |
T |
|
| Q |
201 |
gaaatattgagtcaaaaaagtcattcattccaatccatgggccagtagttacagatggagtctcaaacttggagcatccccatngaagaaatatcngtaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |
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| T |
53159435 |
gaaatattgagtcaaaaaagtcattcattccaatccatgggccagtagttacagatgcagtctcaaacttggagcatccccatagaagaaatatgagtaa |
53159534 |
T |
|
| Q |
301 |
gaagaataaggaaatcngaagt |
322 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
53159535 |
gaagaataaggaaatcagaagt |
53159556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 53159611 - 53159686
Alignment:
| Q |
378 |
cccntaatgtctaaccggcgacnccttaactgccacggncactctagttattatagaatcaattanagagtaaatt |
453 |
Q |
| |
|
||| ||||||| |||||||||| | ||||||||||||| |||||||||||||| |||| ||| | |||||||||| |
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|
| T |
53159611 |
cccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaatt |
53159686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 7369066 - 7368745
Alignment:
| Q |
1 |
tctaatcaacccaataataaaaacccaataattaaaatgcttcatatatatagtagaacacactcttctcaaaattgtgttagcaacgtgacaaaaaatg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
7369066 |
tctaatcaacccaataaaaaaaacccaataattaaaacgcttcatatatatagtagaacacactcttctcaaaattgtgttagcagcgtgacaaaaaatg |
7368967 |
T |
|
| Q |
101 |
gagcaactacttagccgtaaaatacaatatcaaagacataaataaaggcagcaaattaaggaaggaacatagaatgcattaagtctttcactccatagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||| |
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|
| T |
7368966 |
gagcaactacttagccgtaaaatacaatatcaaagacataaataaaggcaacaaattaaggaaggaataaagaatgcattaagtctttcactccagagaa |
7368867 |
T |
|
| Q |
201 |
gaaatattgagtcaaaaaagtcattcattccaatccatgggccagtagttacagatggagtctcaaacttggagcatccccatngaagaaatatcngtaa |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
7368866 |
gaaatattgagtcaaaaaaatcattcattccaatccatgggccagtagttacagatgcagtctcaaacttggagcatccccatagaagaaatatgagtaa |
7368767 |
T |
|
| Q |
301 |
gaagaataaggaaatcngaagt |
322 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
7368766 |
gaagaataaggaaatcagaagt |
7368745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 7368686 - 7368611
Alignment:
| Q |
378 |
cccntaatgtctaaccggcgacnccttaactgccacggncactctagttattatagaatcaattanagagtaaatt |
453 |
Q |
| |
|
||| ||||||| |||||||||| ||||||||||||||| |||| ||||||||| |||| ||| | |||||||||| |
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|
| T |
7368686 |
cccataatgtcaaaccggcgacaccttaactgccacggtcactatagttattaaagaacaaatgaaagagtaaatt |
7368611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 45632744 - 45632420
Alignment:
| Q |
1 |
tctaatcaacccaataataaaaacc-caataattaaaatgcttcatatatatagtagaacacactcttctcaaaattgtgttagcaacgtgacaaaaaat |
99 |
Q |
| |
|
|||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45632744 |
tctaatcaactcaataaaaaaaaactcaataattaaaatgcttcatatatatagtagaacacactcttctcaaaattgtgttagcagcgtgacaaaaaat |
45632645 |
T |
|
| Q |
100 |
ggagcaactacttagccgtaaaatacaatatcaaagacataaataaaggcagcaaattaaggaaggaacatagaatgcattaagtctttcactccataga |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
45632644 |
ggagcaactacttacccgtaaaatacaatatcaaagacataaataaaggcagtaaattaaggaaggaacaaagaatgcattaagtctttcactccataga |
45632545 |
T |
|
| Q |
200 |
agaaatattgagtcaaaaaagtcattcattccaatccatgggccagtagttacagatggagtctcaaacttggagcat--ccccatngaagaaatatcng |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| | |
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|
| T |
45632544 |
agaaatattgagtcaaaaaagtcattcattccaatccatgggccagtagttacagatgcagtctcaaacttggagcatccccccatagaagaaatatgag |
45632445 |
T |
|
| Q |
298 |
taagaagaataaggaaatcngaagt |
322 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
45632444 |
taagaagaataaggaaatcagaagt |
45632420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 45632364 - 45632307
Alignment:
| Q |
378 |
cccntaatgtctaaccggcgacnccttaactgccacggncactctagttattatagaa |
435 |
Q |
| |
|
||| ||||||| |||||||||| | ||||||||||||| |||||||||||||| |||| |
|
|
| T |
45632364 |
cccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaa |
45632307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 44 - 315
Target Start/End: Complemental strand, 39906169 - 39905900
Alignment:
| Q |
44 |
atatatatagtagaacacactcttctcaaaattgtgttagcaacgtgacaaaaaatggagcaactacttagccgtaaaatacaatatcaaagacataaat |
143 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||| | ||||| || |||||||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
39906169 |
atatatatagtagaacgcactattctcaaaagtgtgttacccgcgtgagaacaaatggagcaaccacttagccgtaaa-tacaatatcaaagacatgaac |
39906071 |
T |
|
| Q |
144 |
aaaggcagcaaattaaggaaggaacatagaatgcattaagtctttcactccatagaagaaatattgagtcaaaaaagtcattcattccaatccatgggcc |
243 |
Q |
| |
|
|||| || |||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
39906070 |
aaagacaacaaattaaggaaccaacaaagaatgtcttaagtttttcactccatagaagaaatattgagtcaaaaaactcattcattccaatccatgggtc |
39905971 |
T |
|
| Q |
244 |
agtagttacagatggagtctcaaacttggagcatccccatngaagaaatatcngtaagaagaataaggaaat |
315 |
Q |
| |
|
|||||||||||||| ||||||||| || ||| | ||| || |||||||| | || |||||||||||||||| |
|
|
| T |
39905970 |
agtagttacagatgcagtctcaaattttgag-aaccctatagaagaaatgtgagtgagaagaataaggaaat |
39905900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 41730603 - 41730643
Alignment:
| Q |
144 |
aaaggcagcaaattaaggaaggaacatagaatgcattaagt |
184 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
41730603 |
aaaggcagcaaattaaggaacgaacaaagaaggcattaagt |
41730643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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