View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_9_20 (Length: 484)
Name: 108_9_20
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_9_20 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 9498486 - 9498073
Alignment:
| Q |
1 |
ataacatcctggggtacttccaccacgagcataataataggtatctatacaagaaggatacagatgttattactaggaatgagtggtgtagactacatga |
100 |
Q |
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| T |
9498486 |
ataacatcctggggtacttccaccacgagcataataataggtatctatacaagaaggatacagatgttattaataggaatgagtggtgtagactacatga |
9498387 |
T |
|
| Q |
101 |
cttgaaatgacaattaacagccaagagaagaggtattacagcagtattttccactattttcagagaatcattttttacccattcctgattggcaagatac |
200 |
Q |
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| T |
9498386 |
cttgaaatgacaattaacagccaagagaagaggtattacagcagtattttccactgttttcagagaatcattttttacccattcctgattggcaagatac |
9498287 |
T |
|
| Q |
201 |
ctagctgcatgctggcacaaaaacacagtagtgtcaattgtctgacatactgagagatttcttgttcttgtgattattgttgtaaaaatcnatacatctt |
300 |
Q |
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| T |
9498286 |
ctagctgcatgctggcacaaaaacacagtagtgtcaattgtctgacatactgaaagatttcttgttcttgagattattgttgtaaaaatcaatacatctt |
9498187 |
T |
|
| Q |
301 |
ccaatcacatgtttacaaagtattgcaaaaagggaatnaattaccnaacaaaaaattacttttaanaatgtcaatcanaatcaaaaccctcnttcaaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||| |||| |||||||| |
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| T |
9498186 |
ccaatcacatgtttacaaagtattgcaaaaagggaataaattacaaaacaaaaaattacttttaaaaatgtcaatca-aatcaaa--cctcattcaaaca |
9498090 |
T |
|
| Q |
401 |
ganttgaaacagtcaat |
417 |
Q |
| |
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| T |
9498089 |
gaattgaaacagtcaat |
9498073 |
T |
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