View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 108_9_3 (Length: 464)
Name: 108_9_3
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_9_3 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 70 - 305
Target Start/End: Complemental strand, 42352279 - 42352039
Alignment:
| Q |
70 |
taatgtaatcatatcaatcaacagcatttcatatttgtattctttttaatgttttcatttgat-----gtgagtgtgcccaaatatttttcacttaagat |
164 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
42352279 |
taatgtaatcacatcaatcaacaacatttcatatttgtattctttttaatgttttcatttgatttgatgtgagtgtgcccaaatattttttacttaagat |
42352180 |
T |
|
| Q |
165 |
tgtgcccataaaagagtcgctacatttatgcatatgatcaaatgttggtaaaatagaagcttacaaatgaagtgcatatatgttgcatcaactaattaaa |
264 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42352179 |
tgtgcccataaaagagtcgctccatttgggcatatgatcaaatgttggtaaaatagaagcttacaaatgaagtgcatatatgttgcatcaactaattaaa |
42352080 |
T |
|
| Q |
265 |
tgttatctataatagtcgatgcattatgaagcacaattaat |
305 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
42352079 |
tgttgtctataatagtcgatgcattatgaagcacaattaat |
42352039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 300 - 464
Target Start/End: Complemental strand, 42352507 - 42352343
Alignment:
| Q |
300 |
attaatattttttatcgtctgatctcaatttgtatatgtatgatttgaactgtcctttaacggtcgagatcgtctatcacgtgtaactacgtaattcccc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||| |
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| T |
42352507 |
attaatattttttatcgtctgatctcaatttgtatatgtatgatttgaactgtcctttaacagtcgagatcgtctatcacatgtaactacataactcccc |
42352408 |
T |
|
| Q |
400 |
taaggcaagggaatctcaatcctaattgatgtaaggtaaatcctcatttgtacgagcaagtttta |
464 |
Q |
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| T |
42352407 |
taaggcaagggaatctcaatcctaattgatgtaaggtaaatcttcatttgtacgaacaagtttta |
42352343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42352347 - 42352300
Alignment:
| Q |
1 |
ttttatataatcacaattccaaatcaaaaacatttgagaacaccaaat |
48 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
42352347 |
ttttatatagtcataattccaaatcaaaaacatttgagaacaccaaat |
42352300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 4141364 - 4141304
Alignment:
| Q |
121 |
ttttcatttgatgtgagtgtgcccaaatatttttcacttaagattgtgcccataaaagagt |
181 |
Q |
| |
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|||| ||||||||||| ||| | ||||||||||||| ||| ||||||||||||| |||||| |
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|
| T |
4141364 |
tttttatttgatgtgaatgtactcaaatatttttcatttaggattgtgcccatacaagagt |
4141304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 4141420 - 4141463
Alignment:
| Q |
113 |
ttttaatgttttcatttgatgtgagtgtgcccaaatatttttca |
156 |
Q |
| |
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|
| T |
4141420 |
ttttaattttttcatttgatgtgagagtgcctaaatatttttca |
4141463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 2308402 - 2308443
Alignment:
| Q |
113 |
ttttaatgttttcatttgatgtgagtgtgcccaaatattttt |
154 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
2308402 |
ttttaattttttgatttgatgtgagtgtgcccaaatattttt |
2308443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 1303415 - 1303360
Alignment:
| Q |
126 |
atttgatgtgagtgtgcccaaatatttttcacttaagattgtgcccataaaagagt |
181 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||| ||||| |||||| |
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|
| T |
1303415 |
atttgatgtgagtgtgttcaaatatttttcatttaggattgtgtccatagaagagt |
1303360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 2308470 - 2308513
Alignment:
| Q |
113 |
ttttaatgttttcatttgatgtgagtgtgcccaaatatttttca |
156 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||||||| |
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|
| T |
2308470 |
ttttaatttttccatttgacgtgagtgtgcccaaatatttttca |
2308513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 33940995 - 33940927
Alignment:
| Q |
70 |
taatgtaatcatatcaatcaacagcatttcatatttgtattctttttaatgttttcatttgatgtgagtgtg |
141 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| || || |||||||||||| |||| |||||||||||||||| |
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| T |
33940995 |
taatttaatcacatcaatcaacatcatttaatttt---attctttttaatttttttatttgatgtgagtgtg |
33940927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 41982566 - 41982606
Alignment:
| Q |
112 |
tttttaatgttttcatttgatgtgagtgtgcccaaatattt |
152 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
41982566 |
ttttaaattttttcatttgatgtgagtgtgcccaaatattt |
41982606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 30572586 - 30572652
Alignment:
| Q |
113 |
ttttaatgttttcatttgatgtgagtgtgcccaaatatttttcacttaagattgtgcccataaaaga |
179 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| |||||| || | ||||| |||||||||| |
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| T |
30572586 |
ttttaatttttccatttgatgtgagtgtgcccaaatgcttttcatttggggttgtgaccataaaaga |
30572652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 6924235 - 6924275
Alignment:
| Q |
113 |
ttttaatgttttc-atttgatgtgagtgtgcccaaatattt |
152 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
6924235 |
ttttaattttttctatttgatgtgagtgtgcccaaatattt |
6924275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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