View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_9_63 (Length: 787)
Name: 108_9_63
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_9_63 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 41448791 - 41449349
Alignment:
| Q |
1 |
tcttctttaactagcatggcaagaacattaagtgaactccatgttttcgtcacgttgctgttcgaatctcccaaagtaacagcaaagactgcatcatatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41448791 |
tcttctttaactagcatggcaagaacattaagtgaactccatgttttcgtcacgttgctgttcgaatctcccaaagtaacagcgaagactgcatcatatc |
41448890 |
T |
|
| Q |
101 |
ctcctgctcctggaactccagctaacaatactccttccaagttcattgtagcgtctagaagatgtgtttgtgattctggttcaatctgtatacattgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448891 |
ctcctgctcctggaactccagctaacaatactccttccaagttcattgtagcatctagaagatgtgtttgtgattctggttcaatctgtatacattgcaa |
41448990 |
T |
|
| Q |
201 |
cttatgagattgctgaaatcatgaactgtttaaatgatcgatcaatcaggaaagtaaatgtgagtttctaacaccaaaactctgactacacttcaataca |
300 |
Q |
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| T |
41448991 |
cttatgagattgctgaaatcatgaacggtttaaatgatcgatcaatcaggaaagtaaatgtgagtttctaacaccaaaactctgactacacttcaataca |
41449090 |
T |
|
| Q |
301 |
tattataaaagctgaacaacgtgtaagtatagcatttatgctaataggctctataaacacgatgtaagatggtatctgaacagtaaaaacggtcttatga |
400 |
Q |
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| T |
41449091 |
tattataaaagctgaacaccgtgtaagtatagcatttatgctaataggctctataaacacgatgt-agatggtatctgaacagtaaaaacggtcttatga |
41449189 |
T |
|
| Q |
401 |
atgaatcatggcgttcataactaacaagtcagaacaaagcaagtcnnnnnnnnaactgaaccagagttttctttttcttttatggttactttatcaaatg |
500 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41449190 |
atgaaccatggcgttcataactaacaagtcagaacaaagcaagtcttttttttaactgaaccagagttttctttttcttttatggttactttatcaaatg |
41449289 |
T |
|
| Q |
501 |
gcctgatcaaaggtacaaaaagaaactgtccatacagcaggttcataggtagtcaattgt |
560 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41449290 |
gcctgatcaaaggtacaaaaagaaactgtccatacagcaggttcataggtagtcaattgt |
41449349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 553 - 787
Target Start/End: Original strand, 41448548 - 41448795
Alignment:
| Q |
553 |
tcaattgtaaacccaaacactattggaggagaatac-------------aaaaaacccactcatttttccccctaaaatcggaaagaaacaaatgcctag |
639 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448548 |
tcaattgtaaacccaaacactattggaggagaatacgaaaaaccaacacaaaaaacccactcatttttccccctaaaatcggaaagaaacaaatgcctag |
41448647 |
T |
|
| Q |
640 |
tctaaaagctacattccacataatattttcgtggtgacttatttcattgatgaaaataaacttaatctatatgaatagaagacgcagctgatgtgatttc |
739 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41448648 |
tctaaaagctacattccacataatattttcgtggtgacttatttctttgatgaaaataaacttaatctatatgaatagaagacacagctgatgtgatttc |
41448747 |
T |
|
| Q |
740 |
attggttcttgggtcagcactttctaatgaaactccacaaggatcttc |
787 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448748 |
attggttcttgggtcagcactttctaatgaaactccacaaggatcttc |
41448795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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