View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_9_90 (Length: 422)
Name: 108_9_90
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_9_90 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 33806922 - 33807343
Alignment:
| Q |
1 |
aaataaaccttagaaactagaacaaagatggctttggtaatattcaccaagttgttaaagaagcacaagataaattacatgatatctgacaacaaattta |
100 |
Q |
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| T |
33806922 |
aaataaaccttagaaactggaacaaagatgtctttggtaatattcaccaagttgttaaagaagcagaagataaattacatgatatctgacaacaaattca |
33807021 |
T |
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| Q |
101 |
aacctctggctacttagaaaccaaaatacaacaagagaagctagcacnnnnnnnnccttgaagaagtcctcaacaaagaagaagtatttttgcaagaaaa |
200 |
Q |
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| T |
33807022 |
aacctctggctacttagaaaccaaaatacaacaagagaagctagcacaaaaaaaaccttgaagaagccctcaacaaagaagaagcattttggcaagaaaa |
33807121 |
T |
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| Q |
201 |
atctaaactgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcaccaaaattagaaatnctacnaaacacattacatcaatcaaa |
300 |
Q |
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| T |
33807122 |
atctaaactgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcgccaaaattagaaatactacaaaacacattacatcaatcaaa |
33807221 |
T |
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| Q |
301 |
gatggtggaaacactttcattgatcccatactcattgctaatcatgcccttaatttttntaagtctcttttttgcactnncattgttttgcncgatagct |
400 |
Q |
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| T |
33807222 |
gatggaggaaacactatcattgatcccatactcattgttgatcatgcccttaatttttataagtctcttttttgtactaacattgttttgcaggacagct |
33807321 |
T |
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| Q |
401 |
tgcttatggaagaagtaattcc |
422 |
Q |
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| T |
33807322 |
tgcttatggaagaagtaattcc |
33807343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 391
Target Start/End: Original strand, 43233139 - 43233321
Alignment:
| Q |
209 |
tgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcaccaaaattagaaatnctacnaaacacattacatcaatcaaagatggtgg |
308 |
Q |
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| T |
43233139 |
tgaagtggcatttagaaggtgatagaaacactgcctatttccgtagggttacaaaaattagacatactaccaatctcatcacttcaatcaaagatggcga |
43233238 |
T |
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| Q |
309 |
aaacactttcattgatcccatactcattgctaatcatgcccttaatttttntaagtctcttttttgcactnncattgttttgc |
391 |
Q |
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| T |
43233239 |
aaatattatcactgatcaaaatcttattgctaatcatgccgttaacttttataaatctttattttgcactaacattgttttgc |
43233321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 232499 - 232414
Alignment:
| Q |
337 |
gctaatcatgcccttaatttttntaagtctcttttttgcactnncattgttttgcncgatagcttgcttatggaagaagtaattcc |
422 |
Q |
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| T |
232499 |
gctaatcatgctgttaattattttaaatctttattttgcactaacattgttttgcaggatagcttgcttgtggatgaagtaattcc |
232414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 232640 - 232570
Alignment:
| Q |
196 |
gaaaaatctaaactgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcaccaaaat |
266 |
Q |
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| T |
232640 |
gaaaaatccaaagtgaaatggcatttagaaagtgacaggaacactgcatattttcataggatcaccaaaat |
232570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 11179455 - 11179415
Alignment:
| Q |
211 |
aagtggcatttagaaggtggtaggaacacatcatattttca |
251 |
Q |
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| T |
11179455 |
aagtggcatgtggaaggtgataggaacacatcatattttca |
11179415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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