View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 11737-5_high_4 (Length: 216)

Name: 11737-5_high_4
Description: 11737-5
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 11737-5_high_4
11737-5_high_4
[»] chr4 (1 HSPs)
chr4 (18-204)||(19173558-19173742)
[»] chr2 (1 HSPs)
chr2 (158-204)||(25565003-25565049)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 19173742 - 19173558
Alignment:
18 catctcgtttcaacaaaacttgagtatttagtcttcctctcaagcaaggcagccgatatgaataatcaaatggtgggcctaggaattttgaaagttaatg 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19173742 catctcgtttcaacaaaacttgagcatttagtcttcctctcaagcaaggcagccgatatgaataatcaaatggtgggcctaggaattttgaaagttaatg 19173643  T
118 ttgaaactatcactcgtttgaaagtttcgcatggtggagataggaagtaagccccacaacacaaagtggcgaagaacaaatagaatt 204  Q
    |||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
19173642 ttgaaactatcactcgtttgaaagttttacacagtggagataggaagtaagccccacaacac--agtggcgaagaacaaatagaatt 19173558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 25565003 - 25565049
Alignment:
158 taggaagtaagccccacaacacaaagtggcgaagaacaaatagaatt 204  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||    
25565003 taggaagtaagccccacaacccaaagcggcgaagaacaaatagaatt 25565049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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