View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 11737-5_low_3 (Length: 245)
Name: 11737-5_low_3
Description: 11737-5
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 11737-5_low_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 46341855 - 46342067
Alignment:
| Q |
33 |
caactgtgattttgctaagtatatttggcattggctaagctcaatattgaatctaaacctgagctttcaatcttttaatgaagcattagaagtttgcaac |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46341855 |
caactgtgattttgctaagtatatttggcattggataagctcaatattgaatctaaacctaagctttcaatcttttaatgaagcattagaagtttgcatc |
46341954 |
T |
|
| Q |
133 |
agaagctggtctccccaatgcaagtttgttatcctagcagctatcacaaatatttgttcagcaatttggttttgcagaaaccaaagaagattttcagata |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46341955 |
agaagctggtctccccaatgcaagttggttatcctagcagctatcacaaatatttgttcagcaatttggttttgcagaaaccaaagaagattttcagata |
46342054 |
T |
|
| Q |
233 |
aagtcattaaccc |
245 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
46342055 |
aagtcattcaccc |
46342067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 25981020 - 25981061
Alignment:
| Q |
199 |
tggttttgcagaaaccaaagaagattttcagataaagtcatt |
240 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
25981020 |
tggttttgtagaaaccaaagaagatttgcagataaattcatt |
25981061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 25982110 - 25982151
Alignment:
| Q |
199 |
tggttttgcagaaaccaaagaagattttcagataaagtcatt |
240 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
25982110 |
tggttttgtagaaaccaaagaagatttgcagataaattcatt |
25982151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 25983199 - 25983240
Alignment:
| Q |
199 |
tggttttgcagaaaccaaagaagattttcagataaagtcatt |
240 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
25983199 |
tggttttgtagaaaccaaagaagatttgcagataaattcatt |
25983240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9026 times since January 2019
Visitors: 6793