View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 11737-6_high_1 (Length: 616)

Name: 11737-6_high_1
Description: 11737-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 11737-6_high_1
11737-6_high_1
[»] chr8 (3 HSPs)
chr8 (362-609)||(27572257-27572506)
chr8 (81-205)||(27572504-27572630)
chr8 (17-85)||(27573571-27573639)
[»] chr4 (1 HSPs)
chr4 (151-212)||(22396955-22397016)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 362 - 609
Target Start/End: Complemental strand, 27572506 - 27572257
Alignment:
362 ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27572506 ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca 27572407  T
462 tatattgcattatttcttatagaataatgttaatgattctcgtaaatgttgcttctattaaacccatttgtgttagcatggtgttattgacttggaaatt 561  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||    
27572406 tatattgcattattgcttatagaataatgttaatgattctcgtaaatgttgcttctattaaactcatttgtgttagcatggtggtattgacttggaagtt 27572307  T
562 gggagtgagttcatcctcaatcctcaaggtct--ggttcgattatctctg 609  Q
    ||||||| ||||||||| ||||||||||||||  ||||||||| ||||||    
27572306 gggagtgtgttcatcctaaatcctcaaggtctcaggttcgattttctctg 27572257  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 27572630 - 27572504
Alignment:
81 caaaaatttgtcactgataaatataataaataaataatgagttccactatgta--gttaatatcaactggatatgaatttggttgaaaaactttttccac 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
27572630 caaaaatttgtcactgataaatataataaataaataatgagttccactatgtatagttaatatcaactggatatgaatttggttgaaaaactttttccac 27572531  T
179 gttaaaataacaaaaatatatacatta 205  Q
    |||||||||||||||||||||||||||    
27572530 gttaaaataacaaaaatatatacatta 27572504  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 27573639 - 27573571
Alignment:
17 cttgtatgccattttcccttacggttgattaaacattcttaaaatgcaaatcacacttgcaaaccaaaa 85  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
27573639 cttgtatgccattttcccttacggttgattatacattcttaaaatgcaaatcacacttgcaacccaaaa 27573571  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 22396955 - 22397016
Alignment:
151 atgaatttggttgaaaaactttttccacgttaaaataacaaaaatatatacattataaatat 212  Q
    |||| ||| ||||||||||| |||||   |||||||||||||||||||||  ||||||||||    
22396955 atgatttttgttgaaaaactctttccgtattaaaataacaaaaatatatattttataaatat 22397016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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