View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 11737-6_high_2 (Length: 254)

Name: 11737-6_high_2
Description: 11737-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 11737-6_high_2
11737-6_high_2
[»] chr8 (1 HSPs)
chr8 (15-254)||(40497909-40498148)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 40498148 - 40497909
Alignment:
15 atgaacaacacatatcccagttctttaataattctcgtttgtttaattttcctctacaatatagtgtcctggtaaacttgtttttgtatattcttacttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
40498148 atgaacaacacatatcccagttctttaataattctcgtttgtttaattttcctctacaatatagtgtcctagtaaacttgtttttgtatattcttacttt 40498049  T
115 catattggtaaccaaaaggtacgttgtttctttgttttgtgttgccatgtttcaaagactcttttgtaacataacatgtacttagtagtaaattaactct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
40498048 catattggtaaccaaaaggtacgttgtttctttgttttgtgttgccatgtttcaaagactcttttgtaacataacatgtacttagtagtaatttaactct 40497949  T
215 atttcatttttgaacagattttggcatctaatggcaaata 254  Q
    ||||||||||| |||||||||||| || ||||||||||||    
40497948 atttcattttttaacagattttggtatttaatggcaaata 40497909  T

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