View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 11737_low_7 (Length: 234)

Name: 11737_low_7
Description: 11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 11737_low_7
11737_low_7
[»] chr5 (1 HSPs)
chr5 (18-219)||(37173529-37173732)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 37173732 - 37173529
Alignment:
18 aattttgctgttaaattgagtttgaacgactatggtgaatagattcccaatactactacgagggatgtgtagctcactgagtaaaggaagtaagcaataa 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
37173732 aattttgctgttaaattgagtttgaacgactatgttgaatagatacccaatactactacgagggatgtatagttcactgagtaaaggaagtaaacaataa 37173633  T
118 atgttcatgactcaaatcctgacaataatagtat--atatgttttatagaaatttcattttgaaacttattttaaatccatatataaattgaaagtaacc 215  Q
    || ||||||| || ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37173632 atattcatgattcgaatcctgacaataatagtatatatatgtttgatagaaatttcattttgaaacttattttaaatccatatataaattgaaagtaacc 37173533  T
216 tttg 219  Q
    ||||    
37173532 tttg 37173529  T

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