View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 454-NF4349-Insertion-3 (Length: 286)

Name: 454-NF4349-Insertion-3
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 454-NF4349-Insertion-3
454-NF4349-Insertion-3
[»] chr1 (2 HSPs)
chr1 (204-286)||(38140358-38140441)
chr1 (115-196)||(38164836-38164914)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 38140441 - 38140358
Alignment:
204 gggagagcaaagtatagcgtactttctgccaagctgccaatgc-aaacatttcccataagtttttcaagccaaaactctgtttg 286  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
38140441 gggagagcaaagtatagcgtactttctgccaagctgccaatgcaaaacatttcccataagtttttcaagccaaaactctgtttg 38140358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 38164914 - 38164836
Alignment:
115 ttccaccatagaaagacgttgcatgagctttctgccaagctgctgatgctactcttacttcccaggtgaacaatcccacaag 196  Q
    |||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||    
38164914 ttccaccatagaaag---ttgcatgagctttctgccaagctgctgattctactcttacttctgaggtgaacaaccccacaag 38164836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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