View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 454-NF4349-Insertion-5 (Length: 274)

Name: 454-NF4349-Insertion-5
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 454-NF4349-Insertion-5
454-NF4349-Insertion-5
[»] chr8 (2 HSPs)
chr8 (3-197)||(17881780-17881975)
chr8 (207-247)||(17882011-17882051)
[»] chr2 (2 HSPs)
chr2 (89-151)||(23460857-23460919)
chr2 (94-182)||(28383195-28383283)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 17881780 - 17881975
Alignment:
3 gcttccattgaaatgtagggataactgatttgatgccctccatcaaacaaa--ctggaaaaaattaaagttaaacagcctcgcatcaaaatagaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||  |||  |||  ||||||||||||||||| |||||| |||||    
17881780 gcttccattgaaatgtagggataactgatttgatgccctcaatcaaacaaaaactggatgaaaaaaaaaataaacagcctcgcatcagaataga-tgtga 17881878  T
101 agttgaaacatggaatttagtaataaaatggatatcaggaaatctgagaggggggagggaaggccccaaaggaagggagcggaacataagttgcggc 197  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||| || |||||||||||||||| | ||||||||||||    
17881879 agttgaaacatggaatttagttataaaactgatatcaggaaatctgagagggaggagggaagcccacaaaggaagggagcggcatataagttgcggc 17881975  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 17882011 - 17882051
Alignment:
207 cgctggagcaaccataagaaagtgctctttctctatctcaa 247  Q
    ||||||| |||||||||||||||||||||||||||||||||    
17882011 cgctggaacaaccataagaaagtgctctttctctatctcaa 17882051  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 23460919 - 23460857
Alignment:
89 aatagaatgtgaagttgaaacatggaatttagtaataaaatggatatcaggaaatctgagagg 151  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||    
23460919 aatagaatgtgaagttgaaacatggagtttagtcataaaattgatatcaggaaatctgagagg 23460857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 28383195 - 28383283
Alignment:
94 aatgtgaagttgaaacatggaatttagtaataaaatggatatcaggaaatctgagaggggggagggaaggccccaaaggaagggagcgg 182  Q
    |||||||||||| ||||||||||||||| ||||||   ||||||||||||||||||||| ||| ||||| || ||| ||||| ||||||    
28383195 aatgtgaagttggaacatggaatttagtgataaaactaatatcaggaaatctgagagggaggaaggaagccctcaatggaagagagcgg 28383283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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