View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4353-Insertion-10 (Length: 161)
Name: 454-NF4353-Insertion-10
Description: 454-NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4353-Insertion-10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 4e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 42356481 - 42356607
Alignment:
| Q |
35 |
acacaagtttctaacctttggtgggagtttaagcttccaaatgatactccaatgacctgttactctatgttgcgtcataacactatcattgtcgatgatt |
134 |
Q |
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| T |
42356481 |
acacaagtttctaacctttggtgggagtttaagcttccaaatgatactccaatgacctgttactctatgttgcgtcacaacactatcattgtcgatgatt |
42356580 |
T |
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| Q |
135 |
tcccgataagcattgcagtatgtgtaa |
161 |
Q |
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| T |
42356581 |
tcccgataagcattgcaatatgtgtaa |
42356607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 42357519 - 42357661
Alignment:
| Q |
6 |
catcatacccgacacataccacacagataacacaagtttctaacctttggtgggagtttaagcttccaaatgatactccaatgacctgttactctatgtt |
105 |
Q |
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| T |
42357519 |
catcatgctcgacacataccacataaataacacaagtttttagcctttggtggcattttaagcttccagatgatactccaatgatctattactctttgtt |
42357618 |
T |
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| Q |
106 |
gcgtcataacactatcattgtcgatgatttcccgataagcatt |
148 |
Q |
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| T |
42357619 |
gcgtcacaacactatcattgttgatgatttctcaataagcatt |
42357661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 13998096 - 13998174
Alignment:
| Q |
46 |
taacctttggtgggagtttaagcttccaaatgatactccaatgacctgttactctatgttgcgtcataacactatcatt |
124 |
Q |
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| T |
13998096 |
taacctttggtgggagtttaagattccaaatagaattccaatgcccaggtactctatgttgcagcatgacaatatcatt |
13998174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 33305864 - 33305942
Alignment:
| Q |
46 |
taacctttggtgggagtttaagcttccaaatgatactccaatgacctgttactctatgttgcgtcataacactatcatt |
124 |
Q |
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| T |
33305864 |
taacctttggtgggagtttaagattccaaatagaattccaatgcccaggtactctatgttgcagcatgacaatatcatt |
33305942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 31636830 - 31636752
Alignment:
| Q |
46 |
taacctttggtgggagtttaagcttccaaatgatactccaatgacctgttactctatgttgcgtcataacactatcatt |
124 |
Q |
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| T |
31636830 |
taacctttggtgggagtttaagattccaaatagaattccaatgcccaggtactctatgttgcagcatgacaatatcatt |
31636752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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