View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4353-Insertion-12 (Length: 144)
Name: 454-NF4353-Insertion-12
Description: 454-NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4353-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 6e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 3039919 - 3040057
Alignment:
| Q |
6 |
agctattcgaggatggtgatattcctagacagagaaaatttatgggtacagaagaatttatttttggatgaattgcataaggtaagaccaaataggccct |
105 |
Q |
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| T |
3039919 |
agctatttgaggatggtgataatcctagacagggaaaatttatgggtacagaagaatttatttttggatgaattgcataaggtaagaccaaataggccct |
3040018 |
T |
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| Q |
106 |
tacagtttctatgtaaacccttatttcaaccttcacatg |
144 |
Q |
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| T |
3040019 |
tacagtttctatgtaaacccttatttcaaccttcacatg |
3040057 |
T |
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