View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 454-NF4354-Insertion-3 (Length: 341)
Name: 454-NF4354-Insertion-3
Description: 454-NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4354-Insertion-3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 69 - 341
Target Start/End: Complemental strand, 263365 - 263083
Alignment:
| Q |
69 |
atgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatagttttagttggtgaataataaggtgaattatttggaac |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
263365 |
atgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatagttttagttggtgaataataaggtgaattatttggaac |
263266 |
T |
|
| Q |
169 |
atgagtgattta----------ccgtggaaattagatttgaagatactggtcaatactcacaaacttggtttagcacttatttcaattctatggattaac |
258 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
263265 |
atgagtgatttagcgcattcccccgtggaaattagatttgaagatactggtcaatactcacaaacttggtttagcacttatttcaattctatggattaac |
263166 |
T |
|
| Q |
259 |
tcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
263165 |
tcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagta |
263083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 69 - 341
Target Start/End: Original strand, 652556 - 652838
Alignment:
| Q |
69 |
atgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatagttttagttggtgaataataaggtgaattatttggaac |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
652556 |
atgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatagttttagttggtgaataataaggtgaattatttggaac |
652655 |
T |
|
| Q |
169 |
atgagtgattta----------ccgtggaaattagatttgaagatactggtcaatactcacaaacttggtttagcacttatttcaattctatggattaac |
258 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
652656 |
atgagtgatttagcgcattcccccgtggaaattagatttgaagatactggtcaatactcacaaacttggtttagcacttatttcaattctatggattaac |
652755 |
T |
|
| Q |
259 |
tcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
652756 |
tcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagta |
652838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 69 - 341
Target Start/End: Original strand, 838291 - 838573
Alignment:
| Q |
69 |
atgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatagttttagttggtgaataataaggtgaattatttggaac |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
838291 |
atgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatagttttagttggtgaataataaggtgaattatttggaac |
838390 |
T |
|
| Q |
169 |
atgagtgattta----------ccgtggaaattagatttgaagatactggtcaatactcacaaacttggtttagcacttatttcaattctatggattaac |
258 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
838391 |
atgagtgatttagcgcattcccccgtggaaattagatttgaagatactggtcaatactcacaaacttggtttagcacttatttcaattctatggattaac |
838490 |
T |
|
| Q |
259 |
tcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
838491 |
tcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagta |
838573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 18192673 - 18192608
Alignment:
| Q |
6 |
atatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18192673 |
atatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatg |
18192608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 71
Target Start/End: Complemental strand, 18187648 - 18187617
Alignment:
| Q |
40 |
gaagatgaagataaagatgaatgaagactatg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18187648 |
gaagatgaagataaagatgaatgaagactatg |
18187617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 23944 times since January 2019
Visitors: 3523