View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D611-LTR4-TNT-insertion-14 (Length: 711)
Name: D611-LTR4-TNT-insertion-14
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 10 - 706
Target Start/End: Complemental strand, 36453355 - 36452659
Alignment:
| Q |
10 |
cctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaattttcagaccctggtgcctttg |
109 |
Q |
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| T |
36453355 |
cctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaattttcagaccctggtgcctttg |
36453256 |
T |
|
| Q |
110 |
aacttcttctcagcctccctactgtcaataactgcatcatggaatccataacgtcctctatcatccctcctataataatcatcatcgtaatcacttgcat |
209 |
Q |
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| T |
36453255 |
aacttcttctcagcctccctactgtcaataactgcatcatggaatccataacgtcctctatcatccctcctataataatcatcatcgtaatcacttgcat |
36453156 |
T |
|
| Q |
210 |
catcaatgaacgtggcacgtgtttgtgaatcacgtggtggtgactgaagctggttaacatttccataaggcctcatggcagcaccggaaccagtcctgtc |
309 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36453155 |
catcaatgaacgtgacacgtgtttgtgaatcacgtggtcgtgactgaagctggttaacatttccataaggcctcatggcagcaccggaaccagtcctgtc |
36453056 |
T |
|
| Q |
310 |
agtaaagcgaggagaggcattacctggagttggactatgttgttgatcacgctttgcagcttccatcttcaacaactccatggccttgtcaatgtcatga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36453055 |
agtaaagcgaggagaggcattacctggagttggactatgttgttgatcacgctttgcagcttccatcttcaacaactccatggccttgtcaatgtcatga |
36452956 |
T |
|
| Q |
410 |
attggctcgcttaattgagtcccttttcttggtgctgcagtccaatatgaattaatttttggcccattgaaattggatctgttgttgtaataattagcag |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36452955 |
attggctcgcttaattgagtcccttttcttggtgctgcagtccaatatgaattaatttttggcccattgaaattggatctgttgttgtaataattagcag |
36452856 |
T |
|
| Q |
510 |
cgttatcaccatcatcatatttaggattgctactacttacaaacggcttatcgttgtggttactaataccatagccgttaccatagttgccgttcctagt |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36452855 |
cgttatcaccatcatcatatttaggattgctactacttacaaacggcttatcgttgtggttactaataccatagccgttaccatagttgccgttcctagt |
36452756 |
T |
|
| Q |
610 |
gggcttgtatccttcttttttgttgtagtcactgccatatccattagggctatcatagccatcttgagtactcctcatgctacctactccaattggt |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36452755 |
gggcttgtatccttcttttttgttgtagtcactgccatatccattagggctatcatagccatcttgagtactccttatgctacctactccaattggt |
36452659 |
T |
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